Cper023117.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596229.1:3515449-3526251[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0025 0.2 12.7 0.7 1 23 26 49 26 49 0.97 2 27 0.44 34 5.7 5.5 2 23 56 78 55 78 0.94 3 27 4.2e-06 0.00033 21.5 0.4 1 23 86 109 86 109 0.95 4 27 0.58 45 5.3 1.4 2 17 113 128 112 129 0.92 5 27 0.22 17 6.6 0.2 2 23 140 162 140 162 0.95 6 27 3.6e-07 2.8e-05 24.8 1.7 2 23 169 190 168 190 0.97 7 27 6.1e-07 4.7e-05 24.1 3.5 1 23 196 218 196 218 0.99 8 27 0.083 6.5 8.0 0.0 1 21 224 244 224 245 0.91 9 27 0.0018 0.14 13.2 0.2 1 23 264 287 264 287 0.95 10 27 0.00088 0.068 14.2 1.2 2 23 319 340 318 340 0.96 11 27 2.3e-05 0.0018 19.1 1.8 1 23 343 366 343 366 0.98 12 27 0.034 2.6 9.2 0.1 1 23 393 416 393 416 0.97 13 27 0.00045 0.035 15.1 1.4 1 23 440 462 440 462 0.98 14 27 0.0013 0.11 13.6 1.0 1 23 477 499 477 500 0.95 15 27 0.034 2.6 9.2 1.3 2 23 504 526 503 526 0.97 16 27 0.0019 0.15 13.1 0.4 2 23 532 554 532 554 0.97 17 27 0.00044 0.035 15.1 1.4 2 23 561 582 560 582 0.96 18 27 0.031 2.4 9.3 3.4 1 23 588 610 588 610 0.97 19 27 0.0028 0.22 12.6 0.5 1 22 637 658 637 658 0.96 20 27 0.0011 0.088 13.8 0.6 1 22 696 717 696 717 0.97 21 27 1.2e-05 0.00091 20.1 1.4 1 23 727 749 727 749 0.98 22 27 0.0016 0.12 13.4 0.4 1 23 784 807 784 807 0.94 23 27 2.8 2.2e+02 3.1 3.2 1 19 843 861 843 866 0.84 24 27 0.045 3.5 8.8 0.4 1 23 871 894 871 894 0.97 25 27 0.0024 0.19 12.8 0.3 1 23 900 922 900 922 0.97 26 27 0.00048 0.038 15.0 1.4 1 23 928 950 928 950 0.97 27 27 0.0006 0.047 14.7 2.2 2 23 957 979 956 979 0.96
Sequence Information
- Coding Sequence
- ATGAACGCCTTCGGTGGTAAGCATGGTGAGCCCGCTGTCGACGAATACGTCACAGTGACGAGTGACGACAAAAAATACATGTGCAAAGCTTGCGAGGCGTCGTACAAGCGGATATCGGACCTCCGGTACCACGTCAGGCGGTCTCACCTCAAGCGGACGTTTATTAGGTGCCACCACTGCCCAGAAACCTTTATGTACCACACTCAGAGAAAGGAGCACATAGTCAAAAGCCATTCTAAAATCACTCCCGATAAGTATGTATGCGATTATTGCGATAGAGAGTTTAAGAGGAAGAACACGTTAGCAGAACATATGATGGACGTTCATATTGAGAAGAAATGCCGCTACTGTGACGGGACTTTCGTTAGAAAGAAGTATTTGTTCCATTTGAATGAGGCTCATGGAGTGGCTATGCCGACTTGCGGGATTTGCGGTTTAAGGACTCTGATGCAGAGTGCGTTAGACCGCCACCAGAGAAATGTTCATCTAAATGAAAAGAATAAAAGCTGCAATATTTGCAAGAAAATGTTTTACAGACAGTCGAATTTGCAAGACCATATGATCACACATGAGCAAAAGAGGGTGTTTAAATGCGAAGTGTGCGGGAAGACTTTTGCGAGGAAGGAGTGTTTGAAGACGCACAGAAGGATCCACGCGGGTGAACGACCTTTTGTGTGCGGGGTGTGCAACGCTGCGTTTGTGCAGCGAGCCAGCTTGCGGTTCCATGTGCGGAATGTGTCGGTCGCCGCGTCTGACTACACCCTCGTGGGAGACGGTGGCGGGAACAAATATAGCTGCAACGTATGCGGGACCCTTTACAAGTCCCTCACGTGGATGACGAGACACATCCAAGGGGGGCACGGGGCCCAAACCAAACGACAGAGTGACAGAATCAAAGAGGAAGTTGTCAAAAATGAGATTGACAATCAGGGACAGACCAGTCAAGACAAAATCATGTGTGGAGTCTGCCACAAAGGTATTAAGAATCAGAAGAATATGGCGAAGCATATGAGCACGCATGGACCTTTTAAATGTCCAGAATGTAAAGTACAGTTCTCATCAGCTAAAGAGCTGAGACAGCATAAGAGAAAGACTCACAGCCACGTCTGTCATGTTTGCAACATGAAAACCACTTGCCAGAATAGGATGATCAGTCATCTTCGAACGCACGGCACATACAAATGTGCTGACTGTCCAGATTCGTTTCTGCGTAAAGTCGAATTGGCCGCGCACAAAAGACTGGCTCATAGGACTAAAACCGTCGATACCTTTCGGGGTATCAGCTATACAATTGTAGCTGATGGCGACAAGGAAAACTTCATCTGCCACCAATGTGGCACCATCTCGCCGTCTCTTTCTTCATTGAAATACCACATAAAACGCCACGTGGACTCTTCAAATGGAAATAGAATCAGAACACTGAAGAAGTTCATATGTGACTATTGCGGTAAAGAAACGTCTCTCAAGTGGAAGATGGTAAAACACATACAGGTGCACCACACGCCAGTTAAATGTCCAGAATGCTTCGCGATGTGTCCAAGGCTGTTTGAGCTGTATTCCCACAGAAGATCTTATCATCCCAATACGCTGCCTACATGTGGTATCTGTGGGTTTCAGAGCTCCAAAAAGTATCTTCTGATTATCCATCAGAGGAAGGTGCACATGGGAGAGAAGAACGTTTCCTGCCCTCACTGTGATGCGACGTTCTTTAACCGGAGGATGCTGAACAACCATCTGGTTAGACACAACCCTGTCAAGAAGTTTGAATGCAGATTCTGCAAGAAGAAGTTTCCGAGAAAGAACACGCGGAACTTGCACGAGAAGATACATTTAGGGCAGAAGAATAAAATCTATGTGCACACCGCCACGCCACACGGAGACGACTACACGCTCACACGCGACGGGCCATACACCTGTAGGAAATGCGGCGTCTCCTACAAAACCTTAAATTGGATAAATAGGCACTTAAAGACGAACTGCGGCTATATTCCGAAGAAGTTCACCTGCGACATCTGCAAGAATGATTACAATGTGCGCACCACCGCGTGGCCCGGAGACTACTACAGGCTCACACGCGACGGGCCATACACCTGTAGGAAATGCGGTGTCTCCTACAAAACCTTAACTTGGATAAAGCGGCACATAAAGACGAACTGCGGCCCACCTATTCCGGAGAAGTTCACCTGCGATATCTGCAAGAAAGATTACACAACCCGGAACTATTTAATCAGGCATTTGCGCGGACACGCTCCGAAAGGCGCTCACAGTATTCCCAAGAAACACATTTGCAAGATCTGCGGCGAAGGCGTCGGCCCAAACATGGTCAACCACTTGCATACCCACGGCATCTTCCAATGCCGGACGTGTAAAGAACAATTCCCTGCCAACAGCCAACTTATTTCCCACATGGAAGCTAAACacgttattaaaacaaaatctgtCCGGATCTTCATCTGCGATGCTTGCGGAAGACACGTCCGCGGCAGAGAGCGAGACATGATCAGACATCTGCGTATTCATAACTTCTTCAAATGTAATGCTTGTCCAAAGGTGTATTACAATAGACGCCGCTACGATGCACACTGCAGAGCGAAGCATCCAGTGCCTATGTATTCCTGCGGCGCTTGCGACTACAAAACCAGTATAAAATCTGTTCTCAGAAGTCACCAGAGAAACGTTCACATGAAGGAAAGGAACTTCTCGTGTTCTGAATGCGATGCGTCATTCTTTGCAGCGGGATTCTTAAAGAACCATATGGTGAAACATAATCCGGTGAAGAAGTTTGAATGTAGTTACTGCAAGAAGATGTTTCCTCGGCTGGAGACGAAGACGAGGCACGAGATGATACATACGGGAGAGAAGAGGAAGGTCTGCCGGCTCTGCGACGCGAGGTTTGTGCAGAAGGCCAGTCTCAGTCACCACATGAAGAAGTATCATCCTTCGTTTGTttag
- Protein Sequence
- MNAFGGKHGEPAVDEYVTVTSDDKKYMCKACEASYKRISDLRYHVRRSHLKRTFIRCHHCPETFMYHTQRKEHIVKSHSKITPDKYVCDYCDREFKRKNTLAEHMMDVHIEKKCRYCDGTFVRKKYLFHLNEAHGVAMPTCGICGLRTLMQSALDRHQRNVHLNEKNKSCNICKKMFYRQSNLQDHMITHEQKRVFKCEVCGKTFARKECLKTHRRIHAGERPFVCGVCNAAFVQRASLRFHVRNVSVAASDYTLVGDGGGNKYSCNVCGTLYKSLTWMTRHIQGGHGAQTKRQSDRIKEEVVKNEIDNQGQTSQDKIMCGVCHKGIKNQKNMAKHMSTHGPFKCPECKVQFSSAKELRQHKRKTHSHVCHVCNMKTTCQNRMISHLRTHGTYKCADCPDSFLRKVELAAHKRLAHRTKTVDTFRGISYTIVADGDKENFICHQCGTISPSLSSLKYHIKRHVDSSNGNRIRTLKKFICDYCGKETSLKWKMVKHIQVHHTPVKCPECFAMCPRLFELYSHRRSYHPNTLPTCGICGFQSSKKYLLIIHQRKVHMGEKNVSCPHCDATFFNRRMLNNHLVRHNPVKKFECRFCKKKFPRKNTRNLHEKIHLGQKNKIYVHTATPHGDDYTLTRDGPYTCRKCGVSYKTLNWINRHLKTNCGYIPKKFTCDICKNDYNVRTTAWPGDYYRLTRDGPYTCRKCGVSYKTLTWIKRHIKTNCGPPIPEKFTCDICKKDYTTRNYLIRHLRGHAPKGAHSIPKKHICKICGEGVGPNMVNHLHTHGIFQCRTCKEQFPANSQLISHMEAKHVIKTKSVRIFICDACGRHVRGRERDMIRHLRIHNFFKCNACPKVYYNRRRYDAHCRAKHPVPMYSCGACDYKTSIKSVLRSHQRNVHMKERNFSCSECDASFFAAGFLKNHMVKHNPVKKFECSYCKKMFPRLETKTRHEMIHTGEKRKVCRLCDARFVQKASLSHHMKKYHPSFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -