Cper016439.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596219.1:2669750-2670100[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-09 9e-07 29.0 0.0 2 45 11 54 10 54 0.93 2 2 4.2 1.1e+03 -0.1 0.0 21 30 94 103 93 104 0.86
Sequence Information
- Coding Sequence
- ATGCCAAAGAGAAAGTATTATACATGGAGCAAAGAAAATTTAGAAGAAGCTATTGAAAGATACAATAAAGGGaccttaaaattttacgaaGCTTGTAGTTTGTATAGTATACCGACACCGACTTTAAGACGACATTTAATGGGATTAAATACATACCAAAGAAACGGTCGCCCGAACGATTTAACTGACGAAATGGAAAGCGAACTGGTCAAACACATTTTGTTGATGGAATCTAGATTTTTTGGTCTATCAATAACCGACTTGCGACACTTGGCTTATCAATTAGCCGAAAAATATGGATTAGCACATAGATTTAATAAGGAAACACAGCTGGCTGGATGGAAGtggtaa
- Protein Sequence
- MPKRKYYTWSKENLEEAIERYNKGTLKFYEACSLYSIPTPTLRRHLMGLNTYQRNGRPNDLTDEMESELVKHILLMESRFFGLSITDLRHLAYQLAEKYGLAHRFNKETQLAGWKW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -