Cper016446.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596219.1:2705158-2706429[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-10 9.5e-08 32.2 0.0 4 43 13 52 10 54 0.93 2 2 7.9 2.2e+03 -1.0 0.0 21 30 94 103 93 104 0.89
Sequence Information
- Coding Sequence
- ATGACTACGCGAAAATATAATTGTTGGTCCCAACAAGACATGGAAAAAGCCATCAACGGATATCGAGaaggaaatttaaaatttaatgaggCTTGTCgcgtatataatatacctaaaccAACGTTTCGGCGTCATTTAAAAGGTCTAAATATGCACCAAAGCATCGGCCGGCCCAAGGATTTAAGTAAAGAGATGGAAGAAGAGCTCATTAGACACATTTTAGAGTTAGAATCAAGATTTTTTGGTATAACTATACACGATTTACGGCGTTTGGCCTATCAGCTAGCAGACCGATATAATTTACCACACCGATTCAACACCGAAAAAAAAGTGGCTGGTTGGAAATGGTACTACAAATTTTTGAAAAGCCATCCTGAAATCTCTTTGAGAACGCCAGAACCGACATCCGTTGCACGGTGCAAAGGCTTTAATAAGAAGACAGTCATGGAGTTCTTTGACAAGTACGAATCAGTTCTTGATGAAGGCAAATTTGCAGCTCATCAAATATATAACGTAGATGAGACTGGCTTAAGTACCGTGCACAAGCCGTCAAAGGTTTTGGCTCTAAAAGGGAAGCACCAAATCGGGGCTGTTACTAGTGGGGAGCGGGGTGTTAACACTACATGTGTCTGTTGCATGAACGCAGCTGGTGAGTATATTCCACCAATGTTAATATTCAAGCGCAAAAGAATGACAGACGACTTAAAAAGAGGTGGCCCGCCTAATTCAAAGTACACTTGTTCTGATAGTGGGTGGATAACTTCGGAGTTATTTTTAGAATGGCTTAATCACTTTATAAAGTGCACAAAgctagaaaaaaacaaaaaatatcaagttcTGCTCATTTTAGATGGACATTCCACACATACTAAAAACATAGATGCCATAAATCTTGCACGAGACTACGGAATTGTCATGTTCTCCTTGCCGCCTCATACAACGCACAAACTCCAGCCTTTAGATCGTTCCTTTTTCAAACCTCTGAAACAAAATTTCAATTCAGCATCTACTTCTTGGCTAAGAAATCATCCTGACTCTGTCATTAAACAGTCAAACATCTCCGAGATTTTAGGAACGGCATATGTTCGAGCTGTCTGCATGGAAACGGCTGTGCACGGATTTGAGTCTTGTGGTTTGTGGCCCTGCAATCGGTTCAAAATAAAAGATGATGAATACGTTGTAGTTGATGAAGATAATGACGCACCAATAACAGCGGGCTCATCGACTATAATCAGCTCGGCGAACCTTGATCCCTATGACAGTTCATACTAG
- Protein Sequence
- MTTRKYNCWSQQDMEKAINGYREGNLKFNEACRVYNIPKPTFRRHLKGLNMHQSIGRPKDLSKEMEEELIRHILELESRFFGITIHDLRRLAYQLADRYNLPHRFNTEKKVAGWKWYYKFLKSHPEISLRTPEPTSVARCKGFNKKTVMEFFDKYESVLDEGKFAAHQIYNVDETGLSTVHKPSKVLALKGKHQIGAVTSGERGVNTTCVCCMNAAGEYIPPMLIFKRKRMTDDLKRGGPPNSKYTCSDSGWITSELFLEWLNHFIKCTKLEKNKKYQVLLILDGHSTHTKNIDAINLARDYGIVMFSLPPHTTHKLQPLDRSFFKPLKQNFNSASTSWLRNHPDSVIKQSNISEILGTAYVRAVCMETAVHGFESCGLWPCNRFKIKDDEYVVVDEDNDAPITAGSSTIISSANLDPYDSSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -