Cper001712.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596200.1:2611292-2613208[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-11 1.3e-08 34.9 0.0 2 34 18 50 17 55 0.93
Sequence Information
- Coding Sequence
- ATGGCATCAACAAGTTCAAAATCCAAAGGAAAGACCAGACAAACGTGGGATAAAGATGCAATGGCAAATGCAGTTAAAGCTATACGAGATAAGCAAATGGGTTTTTTGAAAGCATCTAAAACATACGGAGTACCCAAAACAACGCTTATACGCTTATCAAAAATGGAAGACAAATCACTGAGCGACGTTACGAACCATAAACTTGGAAGAAAGTCGATGTTGCCGAGTGAATTGGAAGCTGCATTATctgattatattttagaaattgaAAATTCTGGATTTGGTCTTACGCGCAGGGACATCAGATCTATGGCTTACCAGCTAGCGGAAAAGAATAATTTAAAGCACTCATTTTCACAAGATAATGAATCTGCAGGAAGATCATGGTTGAGGTTATTCCTCAAGCGCCATCCTAACCTATCCTTTCGCCGTCCAACGGGCACATCAATAGCTAGAATGAAAGGATTTAACAGAGGAAATGTAAACGCATTTTTTGACTTGTTAGAGAGCTCTTTTGATAAAATCCAATATCCTGCAACCAATGTGTATAACGTGGACGAAACTGGCATTTCAGTGGTGCCATCAAAAATGCCGGAGATACTAGCACTCAAGGGTAAAAAACAAATAGGGACCGTAACGTCAGCAGAACGTGGATCAACGATCACTTGTGTGATATGTATGAGTGCAGGTGGCTCATTTGTCCCGCCGATGATGATATTCCCGAGGAAACGAGACAATCCACTACTGATGAAAGGTGCTCCACTTGGTGCCATCCATGCTTGTCATCCATCCGGATGGATACAACTTGACCTATTTACTCAATGGTTCGAGCATTTTTTACAGTATGTAAAACCAAGTGCTACATCACCGGTTCTCCTGATTTTAGACGGTCATGTAAGCCATACCAGAAATATCAACGTAGTAGATTTAGCCAGAGAACACCATGTTCGCTTGCTGTCTCTGCCTCCCCACTCAAGTCACAAAATGCAGCCACTTGATAAAACATTCATGGGTCCCTTAAAAAAGTACTTGACTGAAGAAATTTGCAAACGATTAAGAATGCAACCTCGAGCAGTAACACATTTTGACGTAGCGGAATTATTTGGTCTAGCCTACATACGAGCTCAGCGTGCAGAATTGGCCATTAGCGGTTTTCGTGCAACTGGGATATATCCCGTTAATAGACACGTTTTTGAAGATCATGATTTTATTGACGAAGACCTTCCAGAAGTAGAGGGGCCTTCTAATGACCCAGCTCGCGGTATAACGACACCGGTCAATATTATTGCCGATAACCCGACACCTGAACCAAGGGCTGTTGTAACTCCGGAACCTCAATCTGTGAATGAACCATTACCCCAGAGCGTTCATGGCCATGACCAAGCACACGTACCACCAAGAATGCCAACACCGACTATGAATGATTCAATAGTTAGTCCCTCTACATCATCTAGATCATATATTTCGCCAAGGGTGTTGCAGCCTATACCACGTTTAAGGAAAACTATCAGCAACAGAGGAAGAAAAGCCACCAAGCCTACAATTTTGACATCCTCACCTTATAAACAAGATTTAGAAACGTCGATACAAAGGAATATGACAAAGAATACGCCAAAGAAAGCGGCAAAGAAAATGCCAAAAAAGACAGCCCAGAAGAAAAGAAAGAtctcaaaagaaaataaatcatcatttgCAAGTTCTGATAAAAGTGATTATTTAGTCATTGATAGTACCGATGAAAGTCCTGATCGTTCCCAAAATGGtaaatgtttgtattgtaaTGGACTTTTTTCTGAAGACGTTCGTGGAGAGAAATGGATCCAATGTGCTTCATGTAGGCAGTGGGCTCATGAAGACTGTGCTGGCATAGAAGATGTGGTTGATTTCTATGTGTGCGAATTGTGTACCAACAATTAg
- Protein Sequence
- MASTSSKSKGKTRQTWDKDAMANAVKAIRDKQMGFLKASKTYGVPKTTLIRLSKMEDKSLSDVTNHKLGRKSMLPSELEAALSDYILEIENSGFGLTRRDIRSMAYQLAEKNNLKHSFSQDNESAGRSWLRLFLKRHPNLSFRRPTGTSIARMKGFNRGNVNAFFDLLESSFDKIQYPATNVYNVDETGISVVPSKMPEILALKGKKQIGTVTSAERGSTITCVICMSAGGSFVPPMMIFPRKRDNPLLMKGAPLGAIHACHPSGWIQLDLFTQWFEHFLQYVKPSATSPVLLILDGHVSHTRNINVVDLAREHHVRLLSLPPHSSHKMQPLDKTFMGPLKKYLTEEICKRLRMQPRAVTHFDVAELFGLAYIRAQRAELAISGFRATGIYPVNRHVFEDHDFIDEDLPEVEGPSNDPARGITTPVNIIADNPTPEPRAVVTPEPQSVNEPLPQSVHGHDQAHVPPRMPTPTMNDSIVSPSTSSRSYISPRVLQPIPRLRKTISNRGRKATKPTILTSSPYKQDLETSIQRNMTKNTPKKAAKKMPKKTAQKKRKISKENKSSFASSDKSDYLVIDSTDESPDRSQNGKCLYCNGLFSEDVRGEKWIQCASCRQWAHEDCAGIEDVVDFYVCELCTNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408340; iTF_00408341; iTF_01016548; iTF_01016549; iTF_01016550; iTF_00931195; iTF_00186081; iTF_00000245; iTF_01172278; iTF_01182670; iTF_00044431; iTF_00931193;
- 90% Identity
- iTF_00408340; iTF_00408341;
- 80% Identity
- iTF_00408340;