Cper012042.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596213.1:240272-249099[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.1e-09 5.8e-07 29.6 0.0 4 33 49 78 48 81 0.95 2 5 1.9e-10 5.3e-08 33.0 0.0 4 39 196 232 193 236 0.90 3 5 1.4e-10 3.7e-08 33.5 0.3 2 39 248 285 247 288 0.92 4 5 8e-15 2.2e-12 47.0 0.2 2 45 303 347 302 347 0.96 5 5 4.4e-18 1.2e-15 57.4 0.0 1 43 354 397 354 398 0.96
Sequence Information
- Coding Sequence
- ATGCCAGGACACGGGGTGTCCCACGTGAAGTGTGAGCCGCCGTCGGACGAGGAAGACAGCAATTCGCAGTACTCGCTCGGGTACTTGACCAATCAGatgcCTCGAAATTACAACCGGAAAACGACACCGGGATACGAAATTCATGATCTTCAACGTGCAATAGAAGATGTCAGGAGTAAAAAGCTCACATTGGGCAAAGCTGCTGCCAAATACTCCGTTCCAAAAACAACGATATTTAAACAAACAGGGTTGGAGGAACTGGCAccgccggcgccggcgggcCCCGCCGCCACACCGGTGTGCGTCAAGCAGGAGCCGCccgacgcgccgcccgcgctcaCGCTAGAGAATCTCGAGCCCGCGCCGCAGGCCGCCTCCACGGGTTCATCGTTACTGGACAGACACATGGCGATGCTTAATTCGAATCAAGTGCCTGAATCTACGGACTTTATGCCCCTATTGGCTGTTAAAGATGAACCTTTATCTGAAGGAGAGCAATTACCGCTGAGCGGTGAGGACACGAGCGACTCGTGCGGACCGGAGgccggcgcgccgcgcgccagcCCCAAGAGCTGGACGCAGCGCGACATGGACCACGCGCTCGACGCGCTGCGCAACCACAACATGAGCCTTACCAAGGCATCGGCCACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCTCCAAATCGTGGAGCGAGGCTGACCTGCGCGGCGCGCTGCACGCACTACGCGCCGGTGCAATATCAGCTAACAAGGCCAGCAAGGCTTATGGTATCCCGAGCAGCACGCTGTACAAGATCGCCCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTTAATGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGAGCGCGCGCTCGCCTCCatccgcgccggcgccgccagCGTGCAGCGCGCCGCCTCGCAGTACGGAATACCTACAGGAACACTTTACGGGCGATGCAAGCGGGAGGGCATAGAATTATCCCGGTCTAACCCAACGCCGTGGTCTGAGGACGCCATGGGAGAAGCGCTGGAGGCTGTCagAGTGGGACAGATGTCAATAAACCAAGCGGCCATACATTATAACTTACCATACTCATCACTCTACGGACGATTCAAGAGGTGCAAATACCAAACTCAGGGCCTCCAACCAATGCAACAGCAAGATATCCACAAAACCTTAGAATCTGATCCTCAAACCCACCCGCCAGAGTTGTACTACCCCCAGCCTATGCCGGGACCCGCCCCCGCGCCGGAGGAAGCTCCCCTCCAGCACCAGTACTACCACGGCGCCAACATGAGCGAGTCGATGCACGGAGCACTGCACGAACAGTATTACGGGGGCATGTATTACAGCCAGAATTGTAACGGCATTATGACCAGTTGA
- Protein Sequence
- MPGHGVSHVKCEPPSDEEDSNSQYSLGYLTNQMPRNYNRKTTPGYEIHDLQRAIEDVRSKKLTLGKAAAKYSVPKTTIFKQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALTLENLEPAPQAASTGSSLLDRHMAMLNSNQVPESTDFMPLLAVKDEPLSEGEQLPLSGEDTSDSCGPEAGAPRASPKSWTQRDMDHALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRAGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGLQPMQQQDIHKTLESDPQTHPPELYYPQPMPGPAPAPEEAPLQHQYYHGANMSESMHGALHEQYYGGMYYSQNCNGIMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -