Cpun020786.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596195.1:5063446-5066532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6 1.9e+02 3.2 0.4 2 23 115 137 114 137 0.94 2 12 2.1 1.6e+02 3.5 1.8 1 23 143 166 143 166 0.83 3 12 0.049 3.6 8.6 1.0 1 23 172 195 172 195 0.96 4 12 0.00043 0.032 15.1 0.1 3 20 196 213 194 215 0.93 5 12 0.032 2.4 9.2 2.9 2 20 248 266 247 270 0.87 6 12 0.00029 0.021 15.6 0.9 1 20 330 349 330 351 0.92 7 12 0.0016 0.12 13.3 1.0 2 23 378 399 377 399 0.96 8 12 0.00062 0.046 14.6 2.7 1 23 406 428 406 428 0.96 9 12 0.0066 0.49 11.4 3.6 2 23 435 455 434 455 0.96 10 12 4.3e-05 0.0032 18.2 4.2 2 23 462 483 461 483 0.98 11 12 6e-05 0.0045 17.8 1.5 1 23 489 511 489 511 0.98 12 12 8e-05 0.0059 17.4 4.5 1 23 517 540 517 540 0.98
Sequence Information
- Coding Sequence
- ATGCCGCTGTTATATTGTCGTTTCTGTGCAAAACAAACATCATTTCACAACTTGCGGAACTTTCAAATCGATAATGACTTGAAGATCAGTTTATTAGAgaaaatatcatttattaaCGAGTACTTCATTAATTTCAACGACTCCAAACTGCCTGAAACTATTTGTGAGGAGTGTTACGAGGCTCTGGAGGCGAGTTATAAGTTTTTCGTGAATGTGAGACAATCACAGGAGATGCTTGCTGAAGTGTGTCGAATGGAAACCGACCGCGACTTCAAGATCAAACTGGAAAACGTGGACTGCGACATACCCAACACTGGTAACTCCTGGGCGGCATATGAGTGGAGCTGTGGCCACTGCTCCCTATCGCTCCCCTCAATGAACGCTGTCCGGGAACACTCCAAGACGGAGCATAGAACTTGCTCAGCGTTCAAGTGTGCGGACTGCGACCACCGGAGTGACTCCACGTTCGAGGACTTTGTAGCGCATGTGCGGACGCATAGGGACAGTTTGAAATACGCCTGCGAATACTGCAACATAAAAGTAGAAGACAACACCCACGCTCAAACACATAAACAGAAAGACCACTGCCCGACCTGCGGAGAGACATTCGACAGCACATCACTACTGAATGAGCATCAGACGCAATACATGTCTAACATCACAGCACTACTCACCTACGGAGCTGAAATATGTTGCACAGTCAAGTACGAAGATATTAAAACGTGGGCCGAGTACCCGTGCATCTGTATGCATTGTAAAGAACGGTTTGCAGATAAGAAAGCGCTGGTGAAGCATAGCGTTAATACGCATAATCTATGTTTCGCGTTGCTGTGTATAGATTGTAATGAGACGCAGAGCAGTTTTATGGAGTTCGTCGAACATGTTCACAAGCATCGACCAAAGTTGATGCCGATCTGTCCGTTCTGCAACATAGACATGGGCGGTTTCTACAACCTCGAGCACGTCGAGAGCCACAAGCCCAACGCCCACATCTGCGTCATCTGCGGACACGCCTTCAAGCAGCGCCGCTACCTGCGCCGCCACGAGATCAAACTCAAACCGAACCCCTACACCAAACCGCTCATGAAGAGGGACAAAGGACCCAAAGCTCCCATCACTGTCAAGGACCTCACCTGTCCCGACTGTGGCAAGCTATGCAAGTCAAAGTTAGCACTAAAAGGACATCGAATCAGTCACACCAACAGAGCGAAAGATTTCATCTGTGATATGTGCGGCAGAGGCTTCTATTCGCGAAGCAATTTGAATTGCCACAAGAAAATACACGACAGCTCCTGTGTTACCACATGCAAAATATGTAACAAAGATTTTAAGAACACACATCTGAGAGAACACGTCAAGTTGCACACTATGGAAAAGACGATACAGTGTGACCATTGtaaaaaattctttaaaacaaaaaaggcGGTTAAAGATCACATTAAAACTCATATGAGTTTGAAACCTTTTCAGTGCacttattgttataaaagttttatttacgaaAACGGGTTGAAAGTACATCTGAACCAGCATACGGGCGCGAGACCTTACAAGTGTGACACGTGCGACAGAGACTTTACTAACTGGTCTAATTGTGATAAGCATATGAGGAGGAAACACGGGACTACTTTGGCCAAGAGTGTGGTCACGCCTCAAGGGAAGGTAGCGCTCAACCACGAAGGTAAACCGGAGATTCTATTGACCACGGAGGTAGAAGAGTGGTCCCACAAAGTACTAAATGGAGGACGGAAGTTCAAAAACCCGAGACCGCCAATAGTCCTTACTGGAATAACACCGTCCAGCAATATGTTTGATAGCTTCAATAACTGCATGTAA
- Protein Sequence
- MPLLYCRFCAKQTSFHNLRNFQIDNDLKISLLEKISFINEYFINFNDSKLPETICEECYEALEASYKFFVNVRQSQEMLAEVCRMETDRDFKIKLENVDCDIPNTGNSWAAYEWSCGHCSLSLPSMNAVREHSKTEHRTCSAFKCADCDHRSDSTFEDFVAHVRTHRDSLKYACEYCNIKVEDNTHAQTHKQKDHCPTCGETFDSTSLLNEHQTQYMSNITALLTYGAEICCTVKYEDIKTWAEYPCICMHCKERFADKKALVKHSVNTHNLCFALLCIDCNETQSSFMEFVEHVHKHRPKLMPICPFCNIDMGGFYNLEHVESHKPNAHICVICGHAFKQRRYLRRHEIKLKPNPYTKPLMKRDKGPKAPITVKDLTCPDCGKLCKSKLALKGHRISHTNRAKDFICDMCGRGFYSRSNLNCHKKIHDSSCVTTCKICNKDFKNTHLREHVKLHTMEKTIQCDHCKKFFKTKKAVKDHIKTHMSLKPFQCTYCYKSFIYENGLKVHLNQHTGARPYKCDTCDRDFTNWSNCDKHMRRKHGTTLAKSVVTPQGKVALNHEGKPEILLTTEVEEWSHKVLNGGRKFKNPRPPIVLTGITPSSNMFDSFNNCM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00407076;
- 90% Identity
- iTF_00407076;
- 80% Identity
- -