Cpun019919.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596193.1:5892254-5893591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00038 0.028 15.3 2.4 1 23 85 108 85 108 0.95 2 10 0.0001 0.0074 17.1 3.5 2 23 116 138 115 138 0.94 3 10 1.7 1.3e+02 3.8 4.2 2 23 146 168 145 168 0.95 4 10 4.3e-05 0.0032 18.2 3.0 2 23 176 198 175 198 0.96 5 10 0.00011 0.008 17.0 5.7 1 23 205 228 205 228 0.93 6 10 0.0036 0.26 12.2 6.2 1 23 234 257 234 257 0.94 7 10 5.2e-06 0.00039 21.1 1.2 2 23 265 286 264 286 0.97 8 10 0.0025 0.19 12.7 2.4 2 23 294 316 293 316 0.96 9 10 0.00059 0.044 14.6 3.3 2 23 323 345 322 345 0.90 10 10 9e-05 0.0067 17.2 4.1 1 23 355 377 355 377 0.97
Sequence Information
- Coding Sequence
- ATGGCGGCCGACATCAAGCAGGAGCCGGACATAGAAGCGTCCGCTTCTTCCTTCCCTTCACACCCTTTCGAGGGTCCAAAGACTTTCAAACCACCCCCGGTCCCTCAGCCGCTGATGCCGCAACCTTCCTCCGATGGAGTCATGAAATTCATTAGCGTTAACAGTGATATACTAACCAACGAACAACGGGAAATGTACGAATCAGTTCTAGCTACGTGGAAGCCGGTAATGTACCCCAAACAGATCAAACGGTACATCTGCACAAAATGCAGCAAAGAGTTTAAGAATTATCAGAACCTGTACCTCCATACGACTAGGGTACATTCTACCGATGACTCCACCGTCATGTGCGATCAATGCGACAAGTCTTTTAAGAATAAGCACTACTTGTACATGCATAGAATGAACAAACATTATTCCGAATCGGAAAAATGCTACTGTCAATTCTGTCTTCAAGAGTTCCGGACCGGCAGAGCTTTACATATGCACGTTAAGAAGATACACCCAAACACTTTACCGGAAATCAAATGTCAGGAATGCGGCAAAGAGTTCAACGTGCCCTACAAACTGAGACACCATATAGAAAGATGCCATAGAGCCGATAAAGAGAAACACAAGTGTCATATTTGCCAGAAAATGTACAAAACCAACTTGAATTTGAACAGGCATTTACTGTTCCAACACACTAACATCGAAAGGCACCAGTGCGTGTTCTGTCCCATGACGTTCAAGTCCCGCCATCATATGAAGCGTCACGTCCTAAACATTCACCCTCCTTTGGAGTCGAAAGTCCAATGTCCCGAATGCcacaaagaatttaaaaacgaCCAATACCTAAAAGAACATATGCAAATCCACTCCTCACCCGACACTAAAGTAAAATGCGATTTATGTGACAAAATATTCCACTCTCAATTAAGACTTAAAAAGCATAAGAAAATTGTGCATCCGTCTAAACCCAAAATTCGGTGCGAAAAGTGTAATAAAGAGTTTGCCCACGAGCACTACTTGAAAAGGCATAACGATTCCGTGCACGTCGATATTGATGAATCTAATTACGAGCACGAATGTAATCAGTGCGggaaaaagtttaaaatcaaaaagtatttgtcTAATCATCTTTTGAGGCACGAGCAGCAACATCTGAAACGCATATCGCAGATGGTGAAGACAGTATTGAATGAAGATGGTACAGTTAAGACTACTGTAAGTAATAACAAAGGTGGCAGGCCTAGAGGCCGACCTAAAAAGACGAGAGCCGAAATTGAATTCATCAAATGCGAGCCGATGACTACGTCCGAATCGGAGAGCGAGGAAACGGATTCCGAATCGGAATAA
- Protein Sequence
- MAADIKQEPDIEASASSFPSHPFEGPKTFKPPPVPQPLMPQPSSDGVMKFISVNSDILTNEQREMYESVLATWKPVMYPKQIKRYICTKCSKEFKNYQNLYLHTTRVHSTDDSTVMCDQCDKSFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTGRALHMHVKKIHPNTLPEIKCQECGKEFNVPYKLRHHIERCHRADKEKHKCHICQKMYKTNLNLNRHLLFQHTNIERHQCVFCPMTFKSRHHMKRHVLNIHPPLESKVQCPECHKEFKNDQYLKEHMQIHSSPDTKVKCDLCDKIFHSQLRLKKHKKIVHPSKPKIRCEKCNKEFAHEHYLKRHNDSVHVDIDESNYEHECNQCGKKFKIKKYLSNHLLRHEQQHLKRISQMVKTVLNEDGTVKTTVSNNKGGRPRGRPKKTRAEIEFIKCEPMTTSESESEETDSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444167; iTF_00407020;
- 90% Identity
- iTF_00407020;
- 80% Identity
- -