Cpun020364.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596194.1:5420740-5424607[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00063 0.047 14.6 4.3 1 23 144 167 144 167 0.95 2 17 0.2 15 6.7 6.4 1 23 176 199 176 199 0.97 3 17 0.0074 0.55 11.2 0.7 2 23 212 234 211 234 0.97 4 17 0.0002 0.015 16.1 2.0 1 23 243 266 243 266 0.97 5 17 0.00011 0.0084 16.9 2.3 1 23 278 301 278 301 0.97 6 17 3.4e-05 0.0025 18.5 2.8 1 23 320 343 320 343 0.96 7 17 2.4e-05 0.0018 19.0 1.5 2 23 353 375 352 375 0.96 8 17 0.0068 0.51 11.3 0.9 2 20 380 398 379 400 0.92 9 17 0.0032 0.23 12.4 0.6 2 21 405 424 404 427 0.94 10 17 0.0094 0.69 10.9 0.2 3 23 437 458 436 458 0.96 11 17 0.00069 0.051 14.4 4.7 1 23 463 486 463 486 0.95 12 17 0.0022 0.16 12.8 5.7 1 23 498 521 498 521 0.97 13 17 0.00049 0.036 14.9 1.9 1 23 541 564 541 565 0.95 14 17 0.67 50 5.0 0.1 2 23 571 591 570 591 0.93 15 17 0.35 26 5.9 1.8 2 23 597 618 596 618 0.97 16 17 0.066 4.9 8.2 0.2 1 23 684 706 684 706 0.96 17 17 0.072 5.3 8.1 1.9 1 23 712 735 712 735 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCCATAGACATAAAGAAAGAAGAGCGCAAAGACCCGACCTCCTTTCTACCTGAAGAGGAAATGTCTtacgaaataaaaaagaaaaaaaaacggaagaagaagaagcaggAAGATCCGTTTAAGGATATTGAGGAGAAGATTAATAGAGAACCGGCTCTGACGGCACTGGACCCTGATATAGGAGCAGCCTTGGACCCTGAGGTCACCATCAAAGTGGAAAATATAGAGGTGGAGTTGGATTTTAATGATttcTCCCACGTCGACGATGAAAATTACCTACACGACACCCACAACAGCGAGGAAAGTCAGCCAGAGCCCGCAGTCCGCATCGAGGAACAGAACAAGGAGGCCATACTCCTCACCTTCCAAAGCGTTATCAACGACAAAATACTCTACGGAGAGCCTCAGGAAGAAAACGGCACGTTCCTCTGCAAAGTCTGCCATCTAATCTTCAAGTCACAGAAAACACTAGAAACACATCAAAAAAGAAAGCACAAGTTTTTTAGAAGGTCTTTCGAACACCAGTGCGACCATTGCTGCATGTCctacgaaaataaaaacagtttagCTGCCCATTTGAAGAGGAAACATAACCCGAACATTGACGTTGATGATATGAAGGAGAAGACTTGTGATATTTGTGCGTTAGTTTTCAAAGGGACGGGCAGGTTAAGAATGCATATGCGAAGAAAACATGGCTCCTTCGAAGATTCCTTTAAGTATGAATGTGAGCATTGTGGTCTTACGTATGACAAACCTACGAGTTTGATTACTCATAAGAAAAGGAAGCACACCCGACAACCCAAAGTCAATGTCAACGAGTGGTACAAGTGTCCCTTCTGCccgaaaatatttaacaaaagaGAGACTTACTCGAGACATGTCCAAAGGAAGCACAAAGTTGATGACGAAAATTCTACATCTAAAGTAGAAACTAATAGCAGCGGTGAACATATTTGTCCTCATTGTTCACTCGTCTTTTCGTCAGCAAATTACTTAAAATGGCATCTGAGGAGAAAGCATAACGTCCTAATTGATGACTATAGATTGAAATGCAAGATTTGTAACCTGTCTTATAGTAGGATTGAGAGTTTGAAACGACATGTGAGGCGGAAACATGATAAAGGAACTTATTGTGTTGATTGTAACAAGCAGTTTGCTAATAGACAGAATTATTTGAATCATACACATGTGAGAGAAGTGAAGGAATGTCAAGTGTGTGGGCTGATTTACGCTCACCAGGGGGCGCTGGCTCGCCACTTAAGATGCGTACACGAAATAGAAACGCCGAAAACAGTCTTCTGTCCAATATGCAATGCGGGTTTCTACGACAAGCGCCAACTAAAACCTCACTACATGCGAGTACACCTCCAAGTATCTTACACTTGTAAATTTTGCACAAAGTCCTTCAAAGCTAAAGAGAGTTATAGGAgacatttaatgtttaaacaTCCGGATGATAACCAAATCGATGAATGCAAGTTACATAAGTGCGAACATTGTCAAGCACAGTTTAAAGACGAATTTGAACTTTGTAAGCATATTAATGTCAGTCACGGCGAACCGGAGGTCGGTGTCAAGAAAGAGGAAGACGAAGAATATGTACCTCAAACATATAAATGTACTAAGTGCACCGAGGAGTATCCTACTTGGGAACAGTTGAGGACACACTTCGAAAGGATACATCATAATACAGAAGAGACACAGTGTCAGATATGCGGTGACATGGTCAGACGGTCAGATTTACCCAAACACATTCGTGCGCACGACGAAATCGAAGTTCAGTGCAGGTTCTGCGAATTCAAAACCAAAAACAGGGTCAGTATGACACAACATGTGTTGAGACACAAAAACGCAGAAACGTTACATTGCGATTTCAACGGGTGTAGATATAAAACGTACTACGCTAATGCTATGGAGAAACATAAGAAGAAACACGAGGAATTAGGAGTCAAACTCCAATGCGCCAGCTGTCCGTTCCAAACTATGAATAAATACATCTTGCGGTACCACGAGGAAGCTCACTCGACTGGGAAAAAGAGGTATGCGTGCGACAAATGCAGTTACGCAACGATATTGCCAGCCAACTTAGTACAacacaaatataaacattccACGGAGAAAAGGTTTAAGTGCGAAGTGTGTCCGTTTGCGACGAAATATAACACGTCGCTGCGGTTTCACGTTAGGAAAAAGCATTGTGATTTGCCTACTTTTAGTTAG
- Protein Sequence
- MEAIDIKKEERKDPTSFLPEEEMSYEIKKKKKRKKKKQEDPFKDIEEKINREPALTALDPDIGAALDPEVTIKVENIEVELDFNDFSHVDDENYLHDTHNSEESQPEPAVRIEEQNKEAILLTFQSVINDKILYGEPQEENGTFLCKVCHLIFKSQKTLETHQKRKHKFFRRSFEHQCDHCCMSYENKNSLAAHLKRKHNPNIDVDDMKEKTCDICALVFKGTGRLRMHMRRKHGSFEDSFKYECEHCGLTYDKPTSLITHKKRKHTRQPKVNVNEWYKCPFCPKIFNKRETYSRHVQRKHKVDDENSTSKVETNSSGEHICPHCSLVFSSANYLKWHLRRKHNVLIDDYRLKCKICNLSYSRIESLKRHVRRKHDKGTYCVDCNKQFANRQNYLNHTHVREVKECQVCGLIYAHQGALARHLRCVHEIETPKTVFCPICNAGFYDKRQLKPHYMRVHLQVSYTCKFCTKSFKAKESYRRHLMFKHPDDNQIDECKLHKCEHCQAQFKDEFELCKHINVSHGEPEVGVKKEEDEEYVPQTYKCTKCTEEYPTWEQLRTHFERIHHNTEETQCQICGDMVRRSDLPKHIRAHDEIEVQCRFCEFKTKNRVSMTQHVLRHKNAETLHCDFNGCRYKTYYANAMEKHKKKHEELGVKLQCASCPFQTMNKYILRYHEEAHSTGKKRYACDKCSYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406986;
- 90% Identity
- iTF_00406986;
- 80% Identity
- -