Cpun009513.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- ffmA
- Assembly
- GCA_951394245.1
- Location
- OX596177.1:10391765-10400617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.001 0.074 13.9 3.5 1 23 129 151 129 151 0.99 2 12 0.0006 0.045 14.6 2.4 1 23 213 236 213 236 0.94 3 12 0.001 0.078 13.9 0.2 2 23 244 266 244 266 0.94 4 12 0.00073 0.054 14.4 0.2 2 22 277 297 277 301 0.92 5 12 0.001 0.074 13.9 0.2 3 23 307 328 306 328 0.93 6 12 0.097 7.2 7.7 0.7 3 23 342 362 341 362 0.81 7 12 0.0014 0.1 13.5 7.9 1 23 379 401 379 401 0.98 8 12 0.00049 0.036 14.9 0.1 1 23 407 429 407 429 0.95 9 12 0.00016 0.012 16.4 0.2 2 21 434 453 434 453 0.97 10 12 0.00016 0.012 16.4 0.2 2 21 469 488 469 488 0.97 11 12 4.2e-06 0.00031 21.4 0.5 2 23 504 525 504 525 0.98 12 12 0.0025 0.19 12.7 6.7 1 23 531 554 531 554 0.96
Sequence Information
- Coding Sequence
- ATGATCGATCTAGTAAAACCATCAAACCCTGTGATCAAACCAGTGCAATTCGATGACGTACATCCCAAGACAGAAGTAAACGTAGAACAGGAAGATGGCTATTATCAAGAAGAATGTTTGTCTGAACACAATAGTGCTAACAATGAGTACTACAGTGATAACAGTAGTCAGGAACTAcaagattttgacatgtacgGCTATGAGTCCGACTCTAAACACAGTATCGGGATATCGGTAGATCTCTCTGATGATAAAGACTTTGCTTCCGATGGAGACTCGCTCAAAGTGTACAAAGAGTATTTGATCATACATCTTGTGGAGCTTGAGGATGCCAAAGCTCAGATCTTGGCTAAGAAAGATATGGATTTGTATAAGAATTCACAATTTCAATGTGAGTTCTGTTACCGAGGATATAAATCAAAGAGTACCTTTGACAATCATATCAAGAAACACAGTATTGAAAGTGGTAAATTTGAATGTGAAGTATGTAAACTTAGGTTCCATACTATGAACTCGTGCAGTAAACATTTCCAAACAACTCATAGGTACAAGATCTCATGCAAGTTGTGCCCTTACTACGGATACAGCATACCACAAGCCAAACTCCATGTCAATGTACAACATAAAGGGAAGAAATTCACTTGCAGGgaatgtaatgaaatatttagTTCGCCGCGTCAACTGCACCAACACAAGCTGCTGTTCCACGCGGTTAACTGCCGCGAGGCCGTGTGTCCTCTCTGCGGGCTAACTTTCATCACACCAACTGGCTTGCATCTACATGAACTTAAACTGCATAAACATGAAAAGAACGAAAATGCTGGTCCGTACTGTAAAGAATGCGATGTCCAGTTTTCCAACAAGGAGGCTTGGGAGAGGCATTTGAAGATAGCAGCTAAACACAATTTTGTTAACAACTGTAAGCTGTGCGGTGAATCGTTTGAGACGGAGGAATTGTTGACTTTGCATGTCGAGAACTCGCATCCAGAGGAGAAACCGGTGATTGATGGGTCTAGTGTTTTCTGTACATTGTGCTCGAAGGAGTTCACGCGGCGCTCGTTCCGCGGCCACATGGCGGCCGCGCACCCCGGCGAGCTGCCcgagcggcgccgcgccgccggcgAGCGCGGGCCCTTCGTCTGCGAGCACTGCGGCCTCAGCTACAAGATGAAGTGCCACCTGAAGTACCACGTGCGGCGGCACACGGGCGAGCGGCCCTACAGCTGCACGCTGTGCGGCGCGCGCTTCAACCAGCCGGCGCAGTACTACGCGCACCGCGCCGGCCACCGCTACCGGCCGCAGTGCAGCATCTGCGGCCGCGTCTACAAGTACATGTACGGGCTCAGCAAGCACATGCGGCCGGCGCAGTACTACGCGCACCGCGCCGGCCACCGCTACCGGCCGCAGTGCAGCATCTGCGGCCGCGTCTACAAGTACATGTACGGGCTCAGCAAGCACATGCGGCCGGCGCAGTACTACGCGCACCGCGCCGGCCACCGCTACCGGCCGCAGTGCAGCATCTGCGGCCGCGTCTACAAGTACATGTACGGGCTCAGCAAGCACATGCGGatgCACCTCGGCATTCGTCCCCACAAGTGTACGTCGTGTGACAAAACGTTCATCAATAGATGCGATCTCCAACTTCACGTTAAACATGTCCACGAAAAGGTGCCTTGGCCCAAACGAGTCAGGAACAGGAACAAAAACGAAGCCAACAAAGTGACTATAACTGCCAACTAG
- Protein Sequence
- MIDLVKPSNPVIKPVQFDDVHPKTEVNVEQEDGYYQEECLSEHNSANNEYYSDNSSQELQDFDMYGYESDSKHSIGISVDLSDDKDFASDGDSLKVYKEYLIIHLVELEDAKAQILAKKDMDLYKNSQFQCEFCYRGYKSKSTFDNHIKKHSIESGKFECEVCKLRFHTMNSCSKHFQTTHRYKISCKLCPYYGYSIPQAKLHVNVQHKGKKFTCRECNEIFSSPRQLHQHKLLFHAVNCREAVCPLCGLTFITPTGLHLHELKLHKHEKNENAGPYCKECDVQFSNKEAWERHLKIAAKHNFVNNCKLCGESFETEELLTLHVENSHPEEKPVIDGSSVFCTLCSKEFTRRSFRGHMAAAHPGELPERRRAAGERGPFVCEHCGLSYKMKCHLKYHVRRHTGERPYSCTLCGARFNQPAQYYAHRAGHRYRPQCSICGRVYKYMYGLSKHMRPAQYYAHRAGHRYRPQCSICGRVYKYMYGLSKHMRPAQYYAHRAGHRYRPQCSICGRVYKYMYGLSKHMRMHLGIRPHKCTSCDKTFINRCDLQLHVKHVHEKVPWPKRVRNRNKNEANKVTITAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00407042;
- 90% Identity
- -
- 80% Identity
- -