Basic Information

Insect: Cyclophora punctaria
Gene Symbol: -
Assembly: GCA_951394245.1
Location: OX596184.1:4528876-4535445[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0049 0.36 11.8 0.8 1 23 315 337 315 337 0.97

2 12 0.0017 0.13 13.2 1.3 2 23 345 366 344 366 0.94

3 12 0.13 9.6 7.3 0.9 1 23 370 392 370 392 0.97

4 12 0.00039 0.029 15.2 0.5 1 23 397 420 397 420 0.98

5 12 0.0014 0.1 13.5 0.4 1 23 424 447 424 447 0.94

6 12 0.0023 0.17 12.8 0.2 2 21 461 480 460 485 0.92

7 12 0.00051 0.037 14.9 0.4 3 23 495 516 495 516 0.98

8 12 0.082 6.1 7.9 0.9 3 23 537 558 535 558 0.95

9 12 2e-06 0.00015 22.4 0.8 1 23 569 591 569 591 0.99

10 12 3.6e-06 0.00027 21.6 1.3 1 23 597 619 597 619 0.96

11 12 0.0062 0.46 11.4 2.5 1 23 625 647 625 647 0.96

12 12 4.5e-05 0.0033 18.2 0.2 1 23 653 676 653 676 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0049	0.36	11.8	0.8	1	23	315	337	315	337	0.97
2	12	0.0017	0.13	13.2	1.3	2	23	345	366	344	366	0.94
3	12	0.13	9.6	7.3	0.9	1	23	370	392	370	392	0.97
4	12	0.00039	0.029	15.2	0.5	1	23	397	420	397	420	0.98
5	12	0.0014	0.1	13.5	0.4	1	23	424	447	424	447	0.94
6	12	0.0023	0.17	12.8	0.2	2	21	461	480	460	485	0.92
7	12	0.00051	0.037	14.9	0.4	3	23	495	516	495	516	0.98
8	12	0.082	6.1	7.9	0.9	3	23	537	558	535	558	0.95
9	12	2e-06	0.00015	22.4	0.8	1	23	569	591	569	591	0.99
10	12	3.6e-06	0.00027	21.6	1.3	1	23	597	619	597	619	0.96
11	12	0.0062	0.46	11.4	2.5	1	23	625	647	625	647	0.96
12	12	4.5e-05	0.0033	18.2	0.2	1	23	653	676	653	676	0.98

Sequence Information

Coding Sequence: ATGAGTTTTTTATTCCATACCACTACTGTCGTTGATCCGGTCAGAGtttgtagagtttgtttggtGATGGACGTAAAAATGTACAGCTTACAGAGCAGTTTTCAGAGTTATTATGAAGCTGTTTCTGGAATTCCTgtTGTCAATACTGCTGAGTTACCAATGTTCCTGTGTTACGAGTGCGCATGCTATGTGAATAAGTTCTATAACTTCAAAGATAAGTGTCATAAGGGGCAAGCTACACTTTATGGGATACTCAACAGCACTGGACAGATAACAGAACATGATATAAGAAATTTAGACAGAAATAAACTAGAACTTACCTCAAATATATCAGTAAAACAAATAGAGGCAGAAAGCCTACCTTTTGACATTGATTCCTTATTGGAAATtcctgaaataataaaaataaaagatgaaCCCATTTTAATTGATACAGAAAACAATTTAGCTATAACTGTGGGAATAGATAATCTAAAGGAAGAGGATGATTTCCCCGATTTAGGAATCTCTAGTGATGATGAACCATTGTCTATGCACAAGACCAGAGGCAAGAAAAAAgtgaagaaaaaaaagaagaagaaagattGTGTAGTTGATGACAATTTTCAGTTGgatgaaacatttttaaatgtaggTGATGTGGGGGAAGTAGTTGATGTGGGACCTGTGGTTGATGTGGGTGATGTAGCTGATGTAAGTGAAGTCAAAGAAAGAGAAGAAGTATCAGAAACAATAGAGCCTGTAAAAAGAAAACGTGGTCGCCCCAGAAAGACTGATAAAGTAGTAAAGGAACCCAAAATCAGGAGAACGACGAACACCGGTGGTGTTTACCCCGATGACATCAATTTAGAAGAATATGTGGATATAATATCACTCtcgCTAGAAGAACAAATGGAGGAGATAAACAAACGCAAGGAATCCGACAACTATCTGAACGCGCTGTTCCAATGTAACCTCTGTTACAAAGGGTTTATAGATGTCAAGGCATGGCAGCACCACGTCGCCAAACATGAGCCGAAATCTGGAGACATTGAATGTCCAGTGTGCAAGTTCCGGTTTATCAACAAGCGAGCGCTTCATAAGCACGCCACTAATCACGAGAAGAAGTATGCTTGTAAGGCATGCTCCTATGTTTCGAAGACTACAACTCAAGCGAAACAGCATCAACGATGGCATAAAGGCGTCACGTACACCTGCGAATATTGTGACGAAGTTTCAACTAAGTGGACGTCGTACTTGTCGCACGTGCGCATCAAACACCCGTCATCTCACGTGTGCGGCGTCTGCGGGTATTCGTTCGTCAGCTCGCTCGGCTTGACTATGCATAAGACGATGATGCATAAGGATGTTAAGGAGCCAGAAAATTATGAATCTGGGTCGTACTGCGAAGAGTGTGACGTGAAGTTCATATCTTTGGAAGCGTACAAGAGGCACATGGTGACATCTGTCAAACATTCACAGAGCAAGAACTTTAGCCGCGGCTGCCGCGTGTGCGGCGCCACGTTCCCGTCGGCCGAGGAGCTGCGGCTGCACCACCGCAGCGAGCACGCGCGCCAGCGCCCCAAGAACTACGGCCGCAAGCCCAGCGGCCTCACCTGGCCCATCAACTGCCAGCACTGTAACGAAGTAATAGAGAACGCTAGAGATTACTGGACGCATTTCCGACGCAACCACCCGGACAAACCGTATCCCATACAGAAGAATTACGTCTGTGATATTTGTGGCAAGAGCTTCAGGGGCAACGCGTTCCTGACGTACCACAAGCGCACGCACTCGGGCGAGCGCGCGTTCGCGTGCGGCGCGTGCGGCAAGTCGTTCCACAACCGCTCCAACCTGAACCTGCACGTGCGCACGCACTCCGACCTGCGCCCGCACCCCTGCGCCGCCTGCCCCAAGGCCTTCAAGTGCAAGTCGGCGCTCGACCGCCACTACCGGACTCACACTGGTATAAAACCTTACGAATGCGAGGTGTGTGGCAAAGCGTTCGGCCAGTCCAACAGCCGCAAGCTGCACGTGCGGACAGTGCACCTCAAACAACCGGCGCCTTTCATCAGCCGAAGTCGACAGGAGAGGAAGAAATTGCAGAAGGAACAGACAGCTATGccttttgtttattaa
Protein Sequence: MSFLFHTTTVVDPVRVCRVCLVMDVKMYSLQSSFQSYYEAVSGIPVVNTAELPMFLCYECACYVNKFYNFKDKCHKGQATLYGILNSTGQITEHDIRNLDRNKLELTSNISVKQIEAESLPFDIDSLLEIPEIIKIKDEPILIDTENNLAITVGIDNLKEEDDFPDLGISSDDEPLSMHKTRGKKKVKKKKKKKDCVVDDNFQLDETFLNVGDVGEVVDVGPVVDVGDVADVSEVKEREEVSETIEPVKRKRGRPRKTDKVVKEPKIRRTTNTGGVYPDDINLEEYVDIISLSLEEQMEEINKRKESDNYLNALFQCNLCYKGFIDVKAWQHHVAKHEPKSGDIECPVCKFRFINKRALHKHATNHEKKYACKACSYVSKTTTQAKQHQRWHKGVTYTCEYCDEVSTKWTSYLSHVRIKHPSSHVCGVCGYSFVSSLGLTMHKTMMHKDVKEPENYESGSYCEECDVKFISLEAYKRHMVTSVKHSQSKNFSRGCRVCGATFPSAEELRLHHRSEHARQRPKNYGRKPSGLTWPINCQHCNEVIENARDYWTHFRRNHPDKPYPIQKNYVCDICGKSFRGNAFLTYHKRTHSGERAFACGACGKSFHNRSNLNLHVRTHSDLRPHPCAACPKAFKCKSALDRHYRTHTGIKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPFISRSRQERKKLQKEQTAMPFVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00406978;
90% Identity: iTF_00406978;
80% Identity: -