Cpun017064.2
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596189.1:869147-877433[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5e-05 0.0037 18.0 0.9 2 21 160 179 159 180 0.94 2 20 7.4 5.5e+02 1.7 0.3 2 21 300 319 299 320 0.91 3 20 8.6 6.4e+02 1.6 0.2 3 23 326 346 325 346 0.83 4 20 3.8 2.8e+02 2.6 1.6 2 23 352 374 351 374 0.94 5 20 0.0035 0.26 12.2 0.0 1 23 379 401 379 401 0.95 6 20 0.00019 0.014 16.2 0.3 1 23 435 458 435 458 0.93 7 20 2.6e-05 0.0019 18.9 1.9 1 23 464 486 464 486 0.97 8 20 0.053 3.9 8.5 1.0 5 23 496 514 494 514 0.97 9 20 0.088 6.5 7.8 0.7 1 22 520 541 520 543 0.75 10 20 0.00025 0.019 15.8 0.6 1 23 551 574 551 574 0.94 11 20 6.3e-05 0.0047 17.7 0.5 2 21 687 706 687 707 0.95 12 20 0.068 5.1 8.2 0.1 2 23 713 735 712 735 0.95 13 20 0.17 13 6.9 0.9 2 23 741 763 740 763 0.93 14 20 0.00019 0.014 16.2 8.1 1 23 768 790 768 790 0.97 15 20 0.15 11 7.1 2.0 2 20 794 812 794 814 0.93 16 20 1.5e-05 0.0011 19.6 0.4 1 23 840 863 840 863 0.95 17 20 0.00076 0.056 14.3 1.1 1 23 869 891 869 891 0.95 18 20 0.079 5.9 8.0 0.1 1 23 897 919 897 919 0.97 19 20 0.0035 0.26 12.2 0.4 1 23 925 948 925 948 0.94 20 20 2e-05 0.0015 19.3 0.1 2 23 955 977 954 977 0.96
Sequence Information
- Coding Sequence
- ATGAGCCGGGAAGTCGATGTAAAAGCGCTGGTTTCACATCTCGTGAGAGGAGATGGTTTGGATAAATGCCGAATATGTCTTGGAGATACTTCTGAAGGACAGGTCTTCCTTGGGGACGCAGTAATGATGGACGGAGACAAATCTATCACACTATCTGAGCTATTAGAAGCGGTTACAGGAGTCGAGGTGGAGATGGAAAATGCCCTGCCCCCAGCTATATGCTTAAGTTGCTCTGTCTCGGCCATGCAAGCCAAAGAGTTCTGCAATCTTGTTCGAGACTCGGACAAACATTGGACCAACAGCTTGCAACTTCTAGAATACCTACCCGACCACCAGTACTCGAAACAAAGCGACAGCCTTATAGCCATATTagcaaataacaatttaaccATCAGTGAACATTGTgatcaaaaaacaaaagccgCAGAAACCATCACAAATAATGGCTTCAAAAGATTTGGCAAACAAGAGCAGTGCCAATGCCCTATTTGCGGGATGAAGTTTTCATATGCACAAAATTTGTATAAACACTTGAAAGAGTCCGCAGATATGGTCCGAGCTTGTCATGTTTGTGGTGGGATCATGAGTAGAAATGAGTTGGTTGAAGAAAACACCATTCTGCCTCCCCGTTTATGCCGCTTTTGCGCTCAAGATGCAGTTACCgcattcaaattcaaaatcctCTGTCAACAATCTGACCAACACTGGGCTAAAGCCACTGCATTCTTAACACGAATACGAGACCCACCGGGAAATACTGGGAAAGATTTAGTCATATATTATCCAGATAGGATAACTTTAGATGATaaaattcccgagggaattgcAACTTTAGGAGATGCCATAAAAGATGGTCAAGAGGGCAGAAAAAAGTGGAATACGTCTCTGAGTCAAAGCACTTGTCCATTTTGCTCATTCAAAATGAAATCCATTGAAGAATTAAATGATCATCTAAGTAAATCAATGAAACGTGTTTGCTACGCTTGTGGTTCGGTAGTGGATAAGAAAAAGCTGGCTACACATTTGAAGAGTCGACACAAACAAGATGTTTTAACTTGCTCGAACTGTTGCGAAGTTTTTAACAGTCAAGATGGTATAGATCAGCATACGCAGAAATATCACGGGCTTAATTTCTTCATTTGTCCAGTGTGTGGTTTAGGATATGCCAACGAAAGAGGCTTGAGAGCCCACGCATACTCACACAATATTTTCATCTGCAATTGCAGAAAATCTTTCGAGAACTTCAGATGCTTTAAACACCACCAGATATCTTGCAAATCGGAAAAACTAAAACCTAAATTCTACGAATGTGACTACTGCGGCTTAAAATATGACAGGAAACCGTCTTTAAGAATACATATTGTGCAGAAACATCTGTCCGTATTGCCGTTTGTCTGCCAAGTTTGTGGTAAAAGAACTTCAACCTTATCACATTTAAAGTCTCACGAAGATACGCATAAACTAGTCAGGGAGACATTGCAATGTTACTGTGGCAGTAAATTTAAGACGGGCTATGGGTATAGGCTACACATGCGGATGCATAGCGGTGTCACTCCGTACAAATGCGAATTTTGCGACAAGAGTTTCCTCTCTGCGTCCAGGCGGGCTGATCACGTCATAAGAAAGCATAGAAAGTCCAAAAACATGCGTCACGCGTGTGATAAATGTACAGCTTCCTTTATCAGGCCTTgggaattaaaaaaacactattTGTCTATTCATAACATTATTTATGAAGAAAAAATGTGCCCTCTCATAGCGTGCGTGACATGCGTCAATGCTGCAGTGGAAGCTCACAAATTCCGTATATTCGTTCGATATTCAGAATCCATGTGGTACAAAGCCATTGAGAATCTATCACAGTTGGAAATCGACGGGAACGAGTCAGCCATGTTGAAGGCGATGTGTGCGTACTTCACTATGAACAATGACTTGTCGATGTATACGGCCAAAGATTACGTCGGGGGCGAACCCAAAACTATATTGAATAGgactaaaacaaaaactgttaAAAAGACTGAAAGAAAACCTAGATGTTCTAGAATAGGACAGATAGCGACATGCCCGGACTGTCACAAAACATTCGCCAGCCCCTCATTTCTATACATGCATCTCAGAAATAGTGACCAGAAAGATGTCTGTCTAGTCTGCGGCACAGTCACAAATAGAGGTAAAGACATGATGAGTCACATGCAAAATGTACACAAGGAACAGCCTATAATGTGCCACCTATGTCCCGCTTTATGTAATAACGAGGAGGAGCTCAAGAAACACGCTAAAGAAGCGCATTCACGCGGCGGTTACTCGTGCAAACACTGCGGCAGATCTTTCACAAGAAAAACTACGTTCAAATCACACGAGCACATGCATTTGGTTAGGACTTGCAGGAAATGTGGCGCTCAATTCTCAAACCGAGCTTGTTACAGAGAACATAGATCGCAATGCGAACCCGATGCTAAACCCAGTCTGAAGTCTGTATCTCGTAGTAAGAGATCGAACATTCGAGATCCCGCCACATTCATTTGCGATTACTGCAACAAACAGTACACTTCCAGAGCACAACTTCAGAACCATATTCTCTGGATCCACATGGACGTAAGACCCCACCAATGTCAGTGGTGTGGAAAAAGGTTTTACACAGCAAAAAGACTAGCCGATCACACGGTCGTGCATACTAGAGTTAGAAATTTCGAATGTGACATTTGTGGCGCCAAACTCGTTTCCAAGATGGCTGCCGTTTACCACAGAAGACGACATACGGGTGAAAGGCCGTACACTTGTGAGGATTGTGGAGCCAGCTTCATATCGTCGTCACGAAGATTGGAGCATGCTAAACGGAAGCATAATAAGGGTGTTAGAATACCGTGCCCGGAATGTCCATCGACGTTCGTCAGAAAGTTTGAACTGCAGAAACATATTCAGAAAATTCATAAAAAGGAAGTTGAGACTGCCCCTGATATCACTTGGATAAGAGTATAG
- Protein Sequence
- MSREVDVKALVSHLVRGDGLDKCRICLGDTSEGQVFLGDAVMMDGDKSITLSELLEAVTGVEVEMENALPPAICLSCSVSAMQAKEFCNLVRDSDKHWTNSLQLLEYLPDHQYSKQSDSLIAILANNNLTISEHCDQKTKAAETITNNGFKRFGKQEQCQCPICGMKFSYAQNLYKHLKESADMVRACHVCGGIMSRNELVEENTILPPRLCRFCAQDAVTAFKFKILCQQSDQHWAKATAFLTRIRDPPGNTGKDLVIYYPDRITLDDKIPEGIATLGDAIKDGQEGRKKWNTSLSQSTCPFCSFKMKSIEELNDHLSKSMKRVCYACGSVVDKKKLATHLKSRHKQDVLTCSNCCEVFNSQDGIDQHTQKYHGLNFFICPVCGLGYANERGLRAHAYSHNIFICNCRKSFENFRCFKHHQISCKSEKLKPKFYECDYCGLKYDRKPSLRIHIVQKHLSVLPFVCQVCGKRTSTLSHLKSHEDTHKLVRETLQCYCGSKFKTGYGYRLHMRMHSGVTPYKCEFCDKSFLSASRRADHVIRKHRKSKNMRHACDKCTASFIRPWELKKHYLSIHNIIYEEKMCPLIACVTCVNAAVEAHKFRIFVRYSESMWYKAIENLSQLEIDGNESAMLKAMCAYFTMNNDLSMYTAKDYVGGEPKTILNRTKTKTVKKTERKPRCSRIGQIATCPDCHKTFASPSFLYMHLRNSDQKDVCLVCGTVTNRGKDMMSHMQNVHKEQPIMCHLCPALCNNEEELKKHAKEAHSRGGYSCKHCGRSFTRKTTFKSHEHMHLVRTCRKCGAQFSNRACYREHRSQCEPDAKPSLKSVSRSKRSNIRDPATFICDYCNKQYTSRAQLQNHILWIHMDVRPHQCQWCGKRFYTAKRLADHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYTCEDCGASFISSSRRLEHAKRKHNKGVRIPCPECPSTFVRKFELQKHIQKIHKKEVETAPDITWIRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -