Cpun021135.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596196.1:3286004-3293239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.015 1.1 10.2 0.2 1 23 68 90 68 90 0.95 2 20 0.52 38 5.4 1.3 2 23 120 141 120 142 0.93 3 20 0.011 0.79 10.7 0.1 2 23 165 186 164 186 0.97 4 20 0.0014 0.1 13.5 1.0 1 23 190 212 190 212 0.97 5 20 0.029 2.1 9.3 5.4 1 23 217 240 217 240 0.96 6 20 0.016 1.2 10.1 4.1 1 23 246 269 246 269 0.96 7 20 0.00022 0.016 16.0 1.3 1 23 318 340 318 340 0.97 8 20 0.98 73 4.5 0.0 2 23 368 390 367 390 0.93 9 20 0.0098 0.73 10.8 0.5 2 23 411 432 410 432 0.97 10 20 0.15 11 7.1 2.4 1 21 436 456 436 458 0.92 11 20 0.0037 0.27 12.1 1.5 1 23 515 537 515 537 0.96 12 20 0.32 24 6.0 0.8 2 23 567 589 566 589 0.95 13 20 0.0014 0.11 13.4 0.3 2 23 612 633 611 633 0.97 14 20 0.0008 0.059 14.2 0.9 1 23 637 659 637 659 0.97 15 20 0.0017 0.12 13.2 0.5 2 23 665 687 664 687 0.95 16 20 0.82 61 4.8 3.2 1 23 693 716 693 716 0.91 17 20 1.4e-05 0.0011 19.7 0.2 1 23 723 746 723 746 0.97 18 20 0.00075 0.056 14.3 6.0 1 23 752 774 752 774 0.97 19 20 4.4e-07 3.3e-05 24.5 1.2 1 23 780 802 780 802 0.99 20 20 0.00013 0.0095 16.7 2.3 1 23 808 830 808 831 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCGGAGACAGACATCGCTTGCACCCTCTTTCATTCGGTTAGACAAGCGAGTGAGATACAAAAGAAAACTGAAACCGAAGCAGAGAAAGGATTATCATACAAAGAAATAAGAGAAAAGGCTAAGCTGAGGAAGCAACGGTTGAAAATGCTGATAGAGAGTACTATGATCTGCCCTTTCAAATGGAATAAGAATAAGTACCTGTGCTTTTTCTGCGACGAAGCCTTCATGGATCCAGTACTGCTCAGAGAACACAACTCTACTCACGTGGTAAACCCAAAAGAAAACGAAGAAAAATTGGATATCAGTTTATCTAATATCGCAGATTTTATCCGAGTCGATATAACTGACAATCGTTGTAGATTATGCACTGATCAATTTGAAAGCTTAACAGAATTGACTAATCACCTCGCGATTCATCATGATAATATGAAAGACTTGACTGTTGATGAATACGTCTTACCTTTTAAGTTGACGGCGAAGAAAATGCAATGCGGCTTGTGTTCAGAAGTGTATGCCGACTTTAAAGTGCTCACTTCACACATGAATGTACACTTTCCGAATTATATGTGCGATCAATGTGGAATGGAGTTCATTAGTCAAACCCGACTTAAGAGTCATAGCTATACACACGAAACCGGATCCCATCAATGTGAGATATGTAAAAGAGTTTATAAATCGAAGAGGTCGAAAGATAGACATCACAAAGTTGTACATTTGAAGTTTAAACAGCACAGATGTCCTCATTGCTCGCAGACGTTCGACTATTACGGACAGAAGTTGAAACATTTGCGGGAAGTACACGgtgataaagaaaagaaaaacctCAGCGAAGCGCAGAAACTTGCACGTAAAGAAGACCAAGAGAAAAATATGCTACGGAAGCGACAGCTCGAGGTGCTGGCGGAATGTTCTACGATATTCCCATTTAGATGGCAAAAGAGCAAGTATATGTGCTTCTGGTGCCACAGGGGGTTCACGGATCCAGCCCTCTTAAAGGAACACACGTCCAAACACTTGTCACACCCCAAACGAATTCAAAGGGAAATGATGGCATCACATTTCAAGGAGTTCATCAAGGTTGATGTTAATGATATTCGCTGTAGATTGTGCCTTGCTGAATTAGCGAGCTTATCCGACTTGGTGCGTCACCTTGAGAGTGAACATGGGAAGAAGGATTTAAATGCTGACCATCTCTTACCCTTCAAGTTGGATAAGAAGCAACTGAAATGTGTGATATGTTCAGAAGAATTCAACATATTCTCACGCCTAAGTCAACATATGAATACACATTTTGCCAATTTCTTTTGCGATCAATGTGGAATGGAATTCGCCAGTGCTACCCGTCTTCAATATCACAGTCGTTGTCACCAAAAAGGGGAATTTGAATGTGTCGGAATAAGAATCAAGATAAAAGGACATGAAGAGGAAGACGAAGAAGCAAGGAAGTCGACAGACCAAACGAGGCAGAAAAGACAGCAGAGCAAGCTGATTCTGGAAACTTCCACGATTTGTCCGTTTAGGTGGTTGAAGAATAAGTATCTCTGTTTCTATTGCAATGAGACGTTCCTCGACCCAGCCCATCTTAGAGAACACACCTCCACCCATTCTATAACCAAAGAAAGAGGCCTGTTTCTTATTGGTCTCTCAAAAGTAAGAAAACACGAGTTCGTCAAAGTTGACATAACTGATATGAGTTGTAAGTTGTGTCAAACTAAAGtagaaaacataaataaatttaagaggCATCTCTCTGTTGCACACAACAAATATATTGATGAAAATACGAAAGATGGTATTTTACCTTTCAAGTTGACTTTGGAGAAACTAAAGTGTGTGCTGTGCGTAGAAGAATTTGACGATTACAAAACTCTTAACAAACATATGAATGTACATTTTCCGTACTTCGTTTGTGATCATTGTGGCAACGGATTCATGACTCCGGACAGGCTCAGGATCCATCAGTTTTCGCATGAAACCGATTCGGTTAAATGCGAGGTTTGTAACAAGATTTTCAAGTCAAATTATGCAAAGACTGAACATTATGAACGAGTCCATATGAAGGTGAAAAGACACAGATGCACTCGATGCTCGGAGACGTTTCAAAATTACTTCCAACGGTCCAAACACCTAGCAGAAGTCCACGAAGTAAGGGCAAAAgagtataaatgcgaaatatGCGACAAGGTGTACAAAAGCAGCAGTGGCCTAGGAGTTCACAAGCAATCAATACatttaaagctaaaaaaattTGCTTGCGAAATCTGTGATTGGAGATGTTTCTCTCATTCGACTCTCAAACATCACATGCTCACACACACTGGAGAGAGGAAGTACCAATGCGAAATATGCAAGAAAAGCTACGGCAGAAATTATACGCTGCGAGAACATATGAGGATCCACGAAAATGATAGGCGATTTGTGTGCGCTGTCTGTGGACAGGCGTTTGTACAGAAATGTAGTCTTCAAGGTCATACCAAGACGCATCACCGAGAAATTCTATGA
- Protein Sequence
- MSSETDIACTLFHSVRQASEIQKKTETEAEKGLSYKEIREKAKLRKQRLKMLIESTMICPFKWNKNKYLCFFCDEAFMDPVLLREHNSTHVVNPKENEEKLDISLSNIADFIRVDITDNRCRLCTDQFESLTELTNHLAIHHDNMKDLTVDEYVLPFKLTAKKMQCGLCSEVYADFKVLTSHMNVHFPNYMCDQCGMEFISQTRLKSHSYTHETGSHQCEICKRVYKSKRSKDRHHKVVHLKFKQHRCPHCSQTFDYYGQKLKHLREVHGDKEKKNLSEAQKLARKEDQEKNMLRKRQLEVLAECSTIFPFRWQKSKYMCFWCHRGFTDPALLKEHTSKHLSHPKRIQREMMASHFKEFIKVDVNDIRCRLCLAELASLSDLVRHLESEHGKKDLNADHLLPFKLDKKQLKCVICSEEFNIFSRLSQHMNTHFANFFCDQCGMEFASATRLQYHSRCHQKGEFECVGIRIKIKGHEEEDEEARKSTDQTRQKRQQSKLILETSTICPFRWLKNKYLCFYCNETFLDPAHLREHTSTHSITKERGLFLIGLSKVRKHEFVKVDITDMSCKLCQTKVENINKFKRHLSVAHNKYIDENTKDGILPFKLTLEKLKCVLCVEEFDDYKTLNKHMNVHFPYFVCDHCGNGFMTPDRLRIHQFSHETDSVKCEVCNKIFKSNYAKTEHYERVHMKVKRHRCTRCSETFQNYFQRSKHLAEVHEVRAKEYKCEICDKVYKSSSGLGVHKQSIHLKLKKFACEICDWRCFSHSTLKHHMLTHTGERKYQCEICKKSYGRNYTLREHMRIHENDRRFVCAVCGQAFVQKCSLQGHTKTHHREIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -