Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.1e-05 0.0052 16.9 0.0 7 35 46 73 42 78 0.88

2 3 0.099 48 4.2 0.1 28 45 169 186 168 186 0.89

3 3 0.59 2.9e+02 1.7 0.0 12 34 192 213 185 222 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.1e-05	0.0052	16.9	0.0	7	35	46	73	42	78	0.88
2	3	0.099	48	4.2	0.1	28	45	169	186	168	186	0.89
3	3	0.59	2.9e+02	1.7	0.0	12	34	192	213	185	222	0.71

Coding Sequence: ATGGACTCCGGAATCCCCCTAAACATCCACGCGCGACCCAGAATAGTCGGCCGCCGCCCCAATGCAATCGTCAACATAGAAACGGACGTTTTCCAAGAGAAATCCTACAAACAGTACTCGTCGCAACATCTTAGAGATGCACTTATAGCTGTCAAAAAAGGTTACAGTGTTTATGCAGCGTCGAACAAGTATGGTGTGCCAAGGAAAACTTTACGGAATTGGATggaaaaatatgatattaagaGTCAGTTTTCTAAGGAGTACGCGATCGCCAACGTGCAGTGTCAGTACGACAGCGGGTCGGAGGAGGAGCGCCGCGGGCCGCCACTCGACCATACGTACGGCGCGCGCGACGAGCCGCCCGCCTTCGTCATACCGACGAAACCAATCCAGTCAATCGGACAGTTCGACTCGCGCGCGAAGATTATGACACTGGCGCCGGGGTTCAGCACAGTCAACGTGATCCACGTGGGTGACCAGCCGCCCAACATGCCAATGCCGTCGGTATCGGAGTCAAGCCTGAACCGGCGCATCCGGCGCAGCGAGTCGGTGTTGCGGCAGGCCGCCGACTGTGTGTCGCGAGGAAGCACTTTCCAGACGGTTTCGGAGCAGTTCAACATCCCCATTTCCACTATCCGATTCTTCATGGCCCGGAAAGGAATATTACCGAGAAGACGACGCGGCCGAAGTACGCAGGCCCGCACTTCCGCCAGCCCGGAGCCCCCGTTCCATATGCAGCACTACAAACTACCCGCAACTCTGGCGCTGAAGACGGACGACGAAGACGACGCCAACGTGTAG
Protein Sequence: MDSGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKEYAIANVQCQYDSGSEEERRGPPLDHTYGARDEPPAFVIPTKPIQSIGQFDSRAKIMTLAPGFSTVNVIHVGDQPPNMPMPSVSESSLNRRIRRSESVLRQAADCVSRGSTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSTQARTSASPEPPFHMQHYKLPATLALKTDDEDDANV

Sequence clustering based on sequence similarity using MMseqs2