Cpun011800.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596180.1:10298767-10303802[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5e-10 2.4e-07 30.7 0.0 4 39 139 174 136 179 0.89 2 4 1e-10 4.9e-08 33.0 0.0 4 39 193 228 192 232 0.93 3 4 5.8e-16 2.8e-13 49.7 0.2 2 45 246 290 245 290 0.95 4 4 4.4e-17 2.1e-14 53.3 0.0 1 42 297 339 297 340 0.95
Sequence Information
- Coding Sequence
- ATGCTGACCGGCGAATTACGGTCATTCTTAGCCACCAGTGACATTACAAAATGTGGAATCATCCACCAATTTATTGCAACACTTACAGGCAGCCTCGAAGAGCTGGCGCCCTTGGCCCCGGCGGGGCCGGCGGCGACGCCCGTGTGCGTCAAGCAGGAGCCCGACGACACGCCCGCACACACCCTCGAGACGCTCGAGTCCACGCCGCACAACCAGgGTTCCTTGCTGCTAGAGCGGCACCTGGCGATGCTGGGTTCAAGTGAGCCCGACATAGACTTCGTGCCACTGCAGCCTGTTAAAGATGAACCGTCTTCGGAGGGAGAACAACCTCATCTCAGCAGCGACGAGATGAGCGACTCGTGCGGCGTGTcggaggcggcggcgcggggcaGCCCCAAGAGCTGGACGCAGCGAGACATGGACGGGGCCTTGGACGCGCTGCGCTCGCAGAACATGAGCCTCACTAAGGCATCGTGCGTGTTCGGCATCCCGTCGACGACGCTGTggcagcgcgcgcggcggctCGGCATCGACACGCCGAAGCGCGagggcgccgcgcgcgcctgGAGCCAGCCCGACCTGCGGCGCGCGCTCGACCACCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGGGAAGGCATCCGCCTGTCGGCGCCGTTCAACGCCGCGCCGGTGTCGTGGCGCCGCGCCGACCTGCcgcgcgcgctcgccgccatccgcgccggcgccgcctcCGTGCAGCGGGCCGCGCGACACTACGGGATACCCACGGGCACCCTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGTTGTCGCGCTCCAACCCCACGCCGTGGTCCGAGGACGCCATGGGCGAGGCGCTGGACGCCGTCAGGGTCGGTCAGATGTCAATAAACCAAGCGGCTATTCACTTCAACCTGCCCTACTCGTCGCTCTATGGGAGATTTAAGAGGTGCAAGTATCAACCACCGCAATCGCTTCACGATGTACAAACCAATCCAGACGCTATGCAAGAAGTGTACTACAACCAGACACAGATGGCGCCACCGCACTTGGAAGAAAACTTGCAACAGACGTATTCCCAGGAGTTCAACTCAGATGGAGACATTGAGCCATACTCCATGTGTTACAACCAGGGGTACAGCAGTATAGCCACCAGTTGA
- Protein Sequence
- MLTGELRSFLATSDITKCGIIHQFIATLTGSLEELAPLAPAGPAATPVCVKQEPDDTPAHTLETLESTPHNQGSLLLERHLAMLGSSEPDIDFVPLQPVKDEPSSEGEQPHLSSDEMSDSCGVSEAAARGSPKSWTQRDMDGALDALRSQNMSLTKASCVFGIPSTTLWQRARRLGIDTPKREGAARAWSQPDLRRALDHLRAGTLSANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPVSWRRADLPRALAAIRAGAASVQRAARHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALDAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPPQSLHDVQTNPDAMQEVYYNQTQMAPPHLEENLQQTYSQEFNSDGDIEPYSMCYNQGYSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -