Basic Information

Gene Symbol
-
Assembly
GCA_951394245.1
Location
OX596180.1:10298767-10303802[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 5e-10 2.4e-07 30.7 0.0 4 39 139 174 136 179 0.89
2 4 1e-10 4.9e-08 33.0 0.0 4 39 193 228 192 232 0.93
3 4 5.8e-16 2.8e-13 49.7 0.2 2 45 246 290 245 290 0.95
4 4 4.4e-17 2.1e-14 53.3 0.0 1 42 297 339 297 340 0.95

Sequence Information

Coding Sequence
ATGCTGACCGGCGAATTACGGTCATTCTTAGCCACCAGTGACATTACAAAATGTGGAATCATCCACCAATTTATTGCAACACTTACAGGCAGCCTCGAAGAGCTGGCGCCCTTGGCCCCGGCGGGGCCGGCGGCGACGCCCGTGTGCGTCAAGCAGGAGCCCGACGACACGCCCGCACACACCCTCGAGACGCTCGAGTCCACGCCGCACAACCAGgGTTCCTTGCTGCTAGAGCGGCACCTGGCGATGCTGGGTTCAAGTGAGCCCGACATAGACTTCGTGCCACTGCAGCCTGTTAAAGATGAACCGTCTTCGGAGGGAGAACAACCTCATCTCAGCAGCGACGAGATGAGCGACTCGTGCGGCGTGTcggaggcggcggcgcggggcaGCCCCAAGAGCTGGACGCAGCGAGACATGGACGGGGCCTTGGACGCGCTGCGCTCGCAGAACATGAGCCTCACTAAGGCATCGTGCGTGTTCGGCATCCCGTCGACGACGCTGTggcagcgcgcgcggcggctCGGCATCGACACGCCGAAGCGCGagggcgccgcgcgcgcctgGAGCCAGCCCGACCTGCGGCGCGCGCTCGACCACCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGGGAAGGCATCCGCCTGTCGGCGCCGTTCAACGCCGCGCCGGTGTCGTGGCGCCGCGCCGACCTGCcgcgcgcgctcgccgccatccgcgccggcgccgcctcCGTGCAGCGGGCCGCGCGACACTACGGGATACCCACGGGCACCCTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGTTGTCGCGCTCCAACCCCACGCCGTGGTCCGAGGACGCCATGGGCGAGGCGCTGGACGCCGTCAGGGTCGGTCAGATGTCAATAAACCAAGCGGCTATTCACTTCAACCTGCCCTACTCGTCGCTCTATGGGAGATTTAAGAGGTGCAAGTATCAACCACCGCAATCGCTTCACGATGTACAAACCAATCCAGACGCTATGCAAGAAGTGTACTACAACCAGACACAGATGGCGCCACCGCACTTGGAAGAAAACTTGCAACAGACGTATTCCCAGGAGTTCAACTCAGATGGAGACATTGAGCCATACTCCATGTGTTACAACCAGGGGTACAGCAGTATAGCCACCAGTTGA
Protein Sequence
MLTGELRSFLATSDITKCGIIHQFIATLTGSLEELAPLAPAGPAATPVCVKQEPDDTPAHTLETLESTPHNQGSLLLERHLAMLGSSEPDIDFVPLQPVKDEPSSEGEQPHLSSDEMSDSCGVSEAAARGSPKSWTQRDMDGALDALRSQNMSLTKASCVFGIPSTTLWQRARRLGIDTPKREGAARAWSQPDLRRALDHLRAGTLSANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPVSWRRADLPRALAAIRAGAASVQRAARHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALDAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPPQSLHDVQTNPDAMQEVYYNQTQMAPPHLEENLQQTYSQEFNSDGDIEPYSMCYNQGYSSIATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-