Calb021470.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- -
- Assembly
- GCA_963082685.1
- Location
- OY720141.1:1424483-1429586[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.018 1.4 10.0 1.0 1 23 97 119 97 119 0.97 2 17 1.2 94 4.2 0.4 2 23 144 166 143 166 0.93 3 17 1.4 1.1e+02 4.0 0.5 1 23 190 212 190 212 0.84 4 17 0.0011 0.083 13.8 0.3 1 23 216 238 216 238 0.98 5 17 0.00051 0.039 14.9 0.4 1 23 243 266 243 266 0.97 6 17 2.3 1.8e+02 3.4 1.9 2 11 273 282 272 295 0.75 7 17 1.2e-05 0.00089 20.0 3.3 1 23 302 325 302 325 0.98 8 17 8.4e-06 0.00064 20.5 3.1 1 23 331 353 331 353 0.98 9 17 7.6e-05 0.0058 17.5 1.5 1 23 461 483 461 483 0.98 10 17 0.011 0.87 10.6 0.1 2 23 508 530 507 530 0.94 11 17 0.029 2.2 9.3 0.2 1 23 554 576 554 576 0.96 12 17 0.00071 0.054 14.4 1.9 1 23 580 602 580 602 0.94 13 17 0.0045 0.35 11.9 1.0 1 23 607 630 607 630 0.89 14 17 0.088 6.7 7.8 2.0 3 23 638 659 637 659 0.93 15 17 0.026 2 9.5 1.4 1 23 666 689 666 689 0.96 16 17 0.0028 0.21 12.6 2.6 1 23 695 717 695 717 0.98 17 17 0.0001 0.0078 17.0 0.7 1 23 723 745 723 745 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCCCTACCAGAGGTCGgTCCTGAAATAGCTGAAATACCAAGACAAGGAGTAGTTCCATTATTCCAAGTGGAATACGACAGGACGTTGTGCAAACCCTTGGGAGTCATTTCAGACTTCGGGAAGCTGAAACAACTGAAAGAGAAACAGACTGAAGAAGTCCCTAAAACACCTTTGACGAAATTCCAACCAGACCCAAAGCAGAAAATAAGAGCAATTCACCAGAATATTCTAACAGTCTTCGAATGTTCCACTGCATACCCTTTCATGTTCTGGAAGAATAAGTTCAAGTGTTTCGTGTGCCCTGAAACGTTTCTCGGTCTAGTCTCTCTCAAACATCACATGAGTGAACACGACTTGACGCCAATAAAGAGATTGGTCAGGAACAGAAAGGAAATAGTCGTAAGAGTAGACATAAGTGATCTGTCCTGCAAAATATGTTCGATGCAAATGAATGACTTGGACCAAATGAGACTCCATTTGAAAGAATCCCATCAAAAGCCGATCGACTTAGAAGTTCAAGACAATATGGTGCCGTTCGACTTGACAGCTGTGAACGAAGGCTATAAATGTGTTATTTGCAAAGAAATCTTTATGAAAATAAGAGTTTTAGTATTCCACATGACCACTCATTTCAGCAAATACAGCTGCGATGTCTGTGGCTCTGGGTTTATGACTCTACGCCTTCTGAAAACACACTTGAAGGCGCACGAAACTGGGACTTATCCTTGTGATACTTGCGAGAAAACATTCAACACTCCTCTGAAAAGGAAGGTGCATATTCGTAATGCCCATTCTAAGGTTATGCCGCTAAAATGTCCGATGTGTCCGGAACGTTTCAAGTGCAACTTTCGAAAGGTGAAACACTTACAAGACGTTCATAATCAAGTCACGCGAGTGTACAAATGTCCCACCTGTGACCGAAGCTTCCATGTGAAGTATCATCTTGTTCTGCACATAAGATCTGTGCATCAGCAGGATAGGAGACACCAATGCGACATTTGCTCCCAAACGTTTACTCTGAAGAATTCTTTGACTCGGCACATGAAAATTCATGCCGGACCTCCAATGGCTGGACCAACGCGCCCGAAAATAGTTCCACTATTCCAAGTGGAATACGACAGGACGTTGTGCAAACCCTTGGGAGTCATATCCGACTTCGGAAAGCTTAAACAATTAACAATGAAACCGATTCCAAAAGTATCTCAGAGTTCTTCGCCGAAGGAAAGATCTCTATCACCTCTCCCAGCACCTTTGGAACCAACGGCCGAGTGTTCACAACAAGAACAGCTGGAAAAAACGAGAGCAATTAACCAGAACATATTGCTGATCCTCGAATTTTCTACAGCTTTCCCCTTCGCACTCTTGTACAATAACTACAAGTGTTTCGTTTGCCCAGAAATGTTTTGCAACATTGACCTGCTTAAACAACACATGGAAAACCATAATTTGACAGCCATCAAAAAATTGCTTCGAAAAAGAAAAGATATTATTGTAAGAGTAGATATTAGTAATTTGTCATGCAAAATATGTTCGTTGCCAATCAAAGATTTGGATCAACTGAAAGTGCATTTAAAGGAGTTACATCAAAAGCCGATAGATTCGAATGTAGAACACATTATGATACCGTTCGATTTGACACCTGTCAACCGAGCATTTAAGTGCGTTATATGCGAGCAAACATTTGCGAAGATATTGCGTTTAGTAAACCACATGAGTGCACACTTCGCTAATCATAGTTGCGAGATATGTGGTTCAAGGTTTATGACTTTGAAGCATCTGAAAGTTCACATGGGAGGACACGCTACAGGAAACTATCCGTGCGATAAATGCGATAAAACATTCAATACTCCGCTCAGAAGGAAGTTACACTACCAAAACGCGCACTTGAAGTATATGCGGCGAATCTGTCCAATGTGTCCTAAAAGATTCACTTGCGAATACTCGAAACAAAAGCATTTGAAAGAAGTTCACAATCAAGCTGTCTCTGTTCACAAATGCCCGACTTGTGACCGCAactttcttataaaaaaacagCTTGATCTGCATATTAGGAACGTGCATCTTCAAGAACGGAATTATCAGTGCGATGTGTGCTTACAGAAGTTCAGTACTAATTACACGTTGAGATGTCATATGGCAATCCATACAGGGGAGAGACAGTTTAAATGTGGTGTGTGTGACAAAGCGTTTATCAAAGGAAGCCGTCTGAAAGAACATTTGAAGAAACATAACCATTAA
- Protein Sequence
- MAALPEVGPEIAEIPRQGVVPLFQVEYDRTLCKPLGVISDFGKLKQLKEKQTEEVPKTPLTKFQPDPKQKIRAIHQNILTVFECSTAYPFMFWKNKFKCFVCPETFLGLVSLKHHMSEHDLTPIKRLVRNRKEIVVRVDISDLSCKICSMQMNDLDQMRLHLKESHQKPIDLEVQDNMVPFDLTAVNEGYKCVICKEIFMKIRVLVFHMTTHFSKYSCDVCGSGFMTLRLLKTHLKAHETGTYPCDTCEKTFNTPLKRKVHIRNAHSKVMPLKCPMCPERFKCNFRKVKHLQDVHNQVTRVYKCPTCDRSFHVKYHLVLHIRSVHQQDRRHQCDICSQTFTLKNSLTRHMKIHAGPPMAGPTRPKIVPLFQVEYDRTLCKPLGVISDFGKLKQLTMKPIPKVSQSSSPKERSLSPLPAPLEPTAECSQQEQLEKTRAINQNILLILEFSTAFPFALLYNNYKCFVCPEMFCNIDLLKQHMENHNLTAIKKLLRKRKDIIVRVDISNLSCKICSLPIKDLDQLKVHLKELHQKPIDSNVEHIMIPFDLTPVNRAFKCVICEQTFAKILRLVNHMSAHFANHSCEICGSRFMTLKHLKVHMGGHATGNYPCDKCDKTFNTPLRRKLHYQNAHLKYMRRICPMCPKRFTCEYSKQKHLKEVHNQAVSVHKCPTCDRNFLIKKQLDLHIRNVHLQERNYQCDVCLQKFSTNYTLRCHMAIHTGERQFKCGVCDKAFIKGSRLKEHLKKHNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -