Calb014468.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- ZFX
- Assembly
- GCA_963082685.1
- Location
- OY720129.1:9647498-9653544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.9e-05 0.0068 17.2 0.4 1 23 566 588 566 588 0.99 2 15 0.29 22 6.2 0.1 2 23 625 646 624 646 0.93 3 15 3.8e-06 0.00029 21.6 0.3 2 23 667 688 667 688 0.97 4 15 8.7e-07 6.6e-05 23.6 0.5 1 23 696 719 696 719 0.98 5 15 0.012 0.93 10.5 0.6 3 23 727 747 726 747 0.93 6 15 0.006 0.46 11.5 1.1 1 23 753 775 753 775 0.91 7 15 0.0094 0.72 10.9 2.4 1 23 874 896 874 896 0.97 8 15 0.00031 0.023 15.6 3.1 2 23 903 925 902 925 0.92 9 15 0.00033 0.025 15.4 1.8 1 23 931 953 931 953 0.97 10 15 0.0027 0.2 12.6 2.3 1 23 959 981 959 981 0.94 11 15 0.0007 0.053 14.4 0.3 1 23 987 1009 987 1009 0.96 12 15 9.2e-05 0.007 17.2 0.0 2 23 1060 1082 1059 1082 0.92 13 15 1.6e-05 0.0013 19.5 1.2 6 23 1092 1109 1091 1109 0.99 14 15 0.073 5.6 8.1 0.0 1 23 1115 1137 1115 1137 0.92 15 15 0.071 5.4 8.1 0.0 6 23 1145 1163 1144 1163 0.94
Sequence Information
- Coding Sequence
- ATGTGGGTGCTCCTCGCGTGGctcgcggcggcgcgcgccgaGTGGGTGGAGATCTCGCAGCACCACTACCGACGACCCGTACACCTCCCCCACCAGGAACACGTACAACACTACCCCAACCACTCTCTAACACACGACTGGACCACCCACCTACCGGATCCTTTCAAAACGAATCAAGATTTTAACTATCCTGACGTGAAGACCCCCGAAAAACGTCCCACAGATTTCATAACTGGTAAAATCGAAAGAGTCCCCAATGTCGGCAGTGTCAAAAGAGTTCAAATAACCAACACTCCGGTGAAGAGTCCAGCTATGAATGATTGGAAAAGGCCAGAGAACAATGATAGGAAGGACGCTGGCGATGAAATTAATCTGAAGCcagatatttttaaagattcgTTCAAGGAAATTGTGTCTTTGTCGCCAGTAAAGGATAAGATGCGACCGTATGATACACGTACTACTAATAGAGTCAAAGATTTTTCAGAAAATGTGTTACCTCCGTCAGAAGTACCAAACAAAGATGCCAGAAGACCTActaatacaatacaaaaagtTCACAATGAAGATATAACGAAAGTTACAATAGATCATAGTAACAACCCGAAAGTGTCTGTAGTTAATGAGGTGTTGAACAAAAACGAACCACAGTTTATAACGAAGAACGATAAAATTCATCTTGAAGCAAATATTCAACCACCACAAAAAGTGGACAGTCACAGAAACGTTGTTTCAATAGCAGGAGGCTCCAGACCTAATATTGAGAAATCAGATACACAAAACACAAACCAAGAGACAAAAGCGAATACGATGGAGAATATAGTGAAATTCATGAAAGTGGTGACCGAAACTATATCGAGTAGCGCGCGGAGAGGAGTCGACGGGAAGGTTCAGTATTTGAAGCAGCTGAAAGACGTGATGCTAGCAAATATAAAAGAACGCCTAGACGCCACCTGGCCAGACGATGGCGCCAGCCTCCGGCGCCTCTCCCGTTCGGCCAGCGCACGCGGGCACGTCGAGTTTCCTTCGTCGGAGAGCGCGCTTATGACCATATCCTTTCTTACATTCGCAGTCTTTCTCATCAAACTAGTATTGCAAGTTATCCAAACTTACAAGAATAAAGCAATGATAATGGCCCCGGTGATGcttagacaatctctaccgcTGTATGAAGGAGACGGGCTTCAGAACAAACTGGCtgacaaaattaatgaatatttgCCTATCACAGTAAGTGAAGAAGACACTCTGCCCCTTTCCATTTGTTACCAATGTATGAACACTGTGGTGGCGTGGAGCGACCTGGTGCAGTGCTGCGTGCAGGCCGACGCGGCGCTGCGGGCGCGCGCCCCCAACGTTACTAACGTGCAGGAGACTTCTATACAGTATCTAGATAATGGTGATAGTGAAGACAAATATGACAAGTTACATGAAGTGTATAGTGATATATCATGTGTTGTCAAAGAATATCTTAGTGCTTTGGAAACCGAGAAAGGTCCTCATGTCGAAATCGCGTGTCACAAGTGTGACGACAGACCGTCGCTCTCGGTGGACTCGTTCGTGGAGCACGCGGCGACCGCGCACGGCGAGCTGCTGCGGGGCCGCGGCGAGGCGGAGGCCTTCGTGAGCGCGCACGCCGCCGTGCAGGAGTCGCTGGAGCCCGagcccgcgcgcgcgcgcccgccgcccgcgcgctacCGCTGCCCCGCCTGCCGCCACGCCTTCTCCTCGCCCGCGCGCCTCGCGCGACATATGCTCACTCACGCGCCGGCCAGTGCCGACACGCTACGCTGTTGCGGGGAGGAGCACCGTACAGGGGCGGCGCTCGTGTCCCACGTCCGCGCCGCGcacgccgccgcgccggcgccgctgCGCTGCATGAGCTGCGGCCACGAGGCACGCGACGCAGCCGCGCTGCGCCGGCACGTGGCCGCgcacgcgcccgcgccgcgccgcgcgcgcgcgctgcccgACACCAACCAGAAGGCCATCCCGGCGGTATGTCCCAACTGCGGTCGCGGCTTCTCCAACAAGTACAACATGTTCGCGCACCTACGCCTGCACGCCCAACCCGAGCGGCGACGCTACACGTGCCCGCTCTGCCCGCGACACTACTCTACGCCGAGCAACTTGCGCGCGCACGAGCGTAGCGCGCATCGCGGCGAGCTACGTGTGCTGTGCGCGCACTGCGGCGAGCGGTTCACGAACAAGAGCGAACGCGACGCACACGCGCTGCTGCACGGTGATCGGCGGCCGCACGCGTGCACGCGCTGCCCGGCCGCCTTCCGGCACGCGCAATCGCTGCGGCGGCACGAAGATGCgcacgcggcgcggcgcgcgcacgCCTGCGCCCAGCCCGCGCCCTCACCGCcctcgccgccgccccgcGCGTCCCCCGCCGCGTCGCCGACTCCCCTGGGCCGGTTCCGCTCCGCGCTCATCGCCTTCCGCGACCATTACGTATCGCTACACACTTGTACTCGACTCGCCGACTCGACGCCGGCCCGCTCACCGCCCCCGGACGACCTCCGCGCCGACTCGATCCGTCGCTCGCGCCGCGACTCGGCGACGCGGCGCGAGCTCGCCGCCGCGTTCGTGCGCATCGAGGGAAAGCCGGCGTACCAGTGCCCGACGTGCGGCAAGCGGCTGTCGTCTGCGCACACGTACCTGTTCCACCGACGCATCCACTCGGGCGAGCGGCCGTGCGTTTGCCACGTATGTGGCAAGGCGTTCCGCGCACCGCACGGGCTGCGCCGGCACCTCACCGAGACGCacgagcgccgccgccgccactcCTGCGCCACCTGCGCCGCCACCTTCGCCAACTCGCAGAACCTCAAACAGCACCAACGACGCCATACGGGGGAGCGCCCGCACGCATGCGCCGCGTGCGGGCGCCGCTTCGCGCACAGCGGCTCGCTGCACGCGCACCGCGCCAcgcacgccgccgccgcgcctcACGCCTGCCTCGACTGCGGCGCGCGCTTCCGGCTGGCGGCGGGGCTGGCGCGCCACACGCGGCGTCACGCCGCCcggccgcccgcgccgcgcccgcacGCAGCGCGGTCCGTGACGCTGGACgcggcggggcggcggcgcgcgcgctgcccGTGCGGCGCCGTGGTGGCGGCCGGCAACTGGAGGCGccacgcgcgcgcgcacgccgGCGCGCGCCTCCCGTGCGCCGCCTGCGGCCGCGTGTTCACGGACGCGGGCAACCTGGCGCGCCACACGCGAGCGTTGCACGCGGGCGCGCGTCCGCACGTATGCGCCTGCGGCAAGCGCTTTTCGCGCGCCGACCACCTGCGCGACCACCAGCGCACGCACGCGCCCACCCGCGCCTTCCTCTGCGAGGTgtgcggcgcggcgctggtgacggcggcggcgctgcgcgTGCACCGCGCCGGGCATGCGGGGCGGCACGCGTGCGCATGCGGCGCTTCGTACCCGCGCGCgtcgcagctgcgcgcgcacgCGGCCCGCGTGCACCCCGCGCCCGATCATCGACCAGTGGTTCTCACTGTAACGAACCACAACACCGCATGTGATAGCTAA
- Protein Sequence
- MWVLLAWLAAARAEWVEISQHHYRRPVHLPHQEHVQHYPNHSLTHDWTTHLPDPFKTNQDFNYPDVKTPEKRPTDFITGKIERVPNVGSVKRVQITNTPVKSPAMNDWKRPENNDRKDAGDEINLKPDIFKDSFKEIVSLSPVKDKMRPYDTRTTNRVKDFSENVLPPSEVPNKDARRPTNTIQKVHNEDITKVTIDHSNNPKVSVVNEVLNKNEPQFITKNDKIHLEANIQPPQKVDSHRNVVSIAGGSRPNIEKSDTQNTNQETKANTMENIVKFMKVVTETISSSARRGVDGKVQYLKQLKDVMLANIKERLDATWPDDGASLRRLSRSASARGHVEFPSSESALMTISFLTFAVFLIKLVLQVIQTYKNKAMIMAPVMLRQSLPLYEGDGLQNKLADKINEYLPITVSEEDTLPLSICYQCMNTVVAWSDLVQCCVQADAALRARAPNVTNVQETSIQYLDNGDSEDKYDKLHEVYSDISCVVKEYLSALETEKGPHVEIACHKCDDRPSLSVDSFVEHAATAHGELLRGRGEAEAFVSAHAAVQESLEPEPARARPPPARYRCPACRHAFSSPARLARHMLTHAPASADTLRCCGEEHRTGAALVSHVRAAHAAAPAPLRCMSCGHEARDAAALRRHVAAHAPAPRRARALPDTNQKAIPAVCPNCGRGFSNKYNMFAHLRLHAQPERRRYTCPLCPRHYSTPSNLRAHERSAHRGELRVLCAHCGERFTNKSERDAHALLHGDRRPHACTRCPAAFRHAQSLRRHEDAHAARRAHACAQPAPSPPSPPPRASPAASPTPLGRFRSALIAFRDHYVSLHTCTRLADSTPARSPPPDDLRADSIRRSRRDSATRRELAAAFVRIEGKPAYQCPTCGKRLSSAHTYLFHRRIHSGERPCVCHVCGKAFRAPHGLRRHLTETHERRRRHSCATCAATFANSQNLKQHQRRHTGERPHACAACGRRFAHSGSLHAHRATHAAAAPHACLDCGARFRLAAGLARHTRRHAARPPAPRPHAARSVTLDAAGRRRARCPCGAVVAAGNWRRHARAHAGARLPCAACGRVFTDAGNLARHTRALHAGARPHVCACGKRFSRADHLRDHQRTHAPTRAFLCEVCGAALVTAAALRVHRAGHAGRHACACGASYPRASQLRAHAARVHPAPDHRPVVLTVTNHNTACDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -