Calb005726.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- -
- Assembly
- GCA_963082685.1
- Location
- OY720117.1:3784893-3793655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0035 0.27 12.2 1.6 3 23 206 227 205 227 0.96 2 23 5.6 4.2e+02 2.2 1.4 4 23 584 605 582 605 0.84 3 23 0.035 2.6 9.1 0.6 1 22 610 631 610 631 0.95 4 23 0.00026 0.02 15.8 1.2 3 22 704 723 704 723 0.96 5 23 0.43 32 5.7 0.8 3 23 732 753 730 753 0.95 6 23 0.0067 0.51 11.3 0.2 3 23 776 797 774 797 0.96 7 23 0.00073 0.056 14.4 0.6 1 23 803 826 803 826 0.92 8 23 0.095 7.2 7.7 0.0 1 23 852 875 852 875 0.90 9 23 0.0041 0.31 12.0 3.5 1 23 880 902 880 902 0.97 10 23 0.0064 0.49 11.4 0.2 1 23 908 931 908 931 0.95 11 23 0.0017 0.13 13.2 1.3 1 23 944 966 944 966 0.97 12 23 0.00013 0.01 16.7 1.8 1 23 1025 1048 1025 1048 0.97 13 23 0.0029 0.22 12.5 1.8 1 23 1109 1132 1109 1132 0.96 14 23 0.0017 0.13 13.2 1.5 2 23 1158 1180 1157 1180 0.95 15 23 0.012 0.9 10.6 0.1 2 23 1186 1208 1185 1208 0.94 16 23 0.0049 0.38 11.8 0.3 1 21 1252 1272 1252 1273 0.95 17 23 0.00093 0.071 14.0 0.6 1 23 1283 1305 1283 1305 0.93 18 23 0.00079 0.06 14.3 0.2 3 23 1395 1416 1394 1416 0.92 19 23 2.5e-07 1.9e-05 25.3 1.4 3 23 1423 1443 1422 1443 0.98 20 23 0.093 7.1 7.7 1.4 3 23 1464 1484 1462 1485 0.95 21 23 0.091 6.9 7.8 0.0 1 23 1507 1529 1507 1529 0.97 22 23 0.021 1.6 9.8 0.6 1 23 1535 1558 1535 1558 0.95 23 23 0.00019 0.015 16.2 0.4 1 23 1566 1589 1566 1589 0.96
Sequence Information
- Coding Sequence
- atgaGTGTGAACTATGATCGTGTTTGTAGACTGTGTTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACACGGAACCTTACATCCTAGCTTCTAAAATCAAGGATTGTGTGGCTGTCCAGATAAATGAAACTGACAATCTTCCTACAAATGTCTGCAGAAAATGTGTAGACAATGTCAATAACTGGCACATATTCAAGACTGTTTGTGAAAAGGCACAAAACAAACTACTGTCTCTGATTGAAAAGGATGGAAGCCTACTAGAAGAGGTGAATGTGAAAAGTGAGCCCTTATCTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGCTCATACCATGATGTGGAGAATGCAAGTGCTTCGAGTAAACTACAACCTGAAGGGCCCCCTATCTTGGCTTCATTGGGACTTACACCAAAAAGCGATAAGGGGGTCGAAAGCGACAAAGAGGAAGAAGACTACGAGGATGAACCAAATGAGGCTCCTAAAACTATGAAAGTGCCAAACATGCCTGAAGTGTCCATCACAGTGATGAGGCCTACAGGGGAGACCCTCCACGCCCGCCAAGGGATCCAACAGATAGCGTCCAAAGACTGCCTGATCTGCGGCCGAACCTACAGGTACTCACACAACGCACGGCGACACGAACTCACGTCCCACAGCTTCGACAGGTACACCAATAAAATAACCAGCAAGCGGTCGAGGACACATTCCCGCTCACACATGCAACCCAAACTCAGGCCCAACCCCTTCAACCCAAAAGCTCGACTCATGCCCAACCCAATTAGCCACAAAATGCAGTTAGTGTCCAAAAATATGGCCGGAAAAATGATACCCAAAGTCTTAACTCCACCGAAACCTATACCtatcaaaatatcaaaaacgcCACACAATAACTTGCCGTACCCGCTACGTATAAAAGCACTGAAAGATTTACAAATTAAGAAGAAAGAACCGCAAATTCTTAAAACTTTGCTGACTTCCAAACCTGAAGTTTTAGTGTCAGAGCCGGAAATTATGAATTCGGGACCAGAGAGTCCTGAGACACTGATATCTGAACCTGAAATAGCATCGTTCCAAGTGGAAGCTATACTTTCTGAGCCGAACGAATATGATCAAAATCAAGACGAAGAAGGTGAAATGGAAATAGCTACCACCCAAAGTCAAAACTATGACACATTGGACATGGAGTCCGATAACGAAATAGAAATAGCAAGGGAACAAGATCATGAAGGAGATAATCCAGAAAATATGGAGGAAGATGACAATCAGACTGATGAGCATTTAAAAGAGAAGGAAGGAGAATCTGACAATGAAAAAGAAGAATTAGAGGGCGAGAGTCAAATAGATAATGATGACAACTATGATGAGACGAGAGAAGAAGACGATGGAAATGACGCAGAAGGAAATGAAGAAGGAGAGAATGAGGAACAGGACCAGACACAGATAGAGGAAAATGAATATGATGATGATGGCCCACCGGAAGGATTGGCTCCAGTTGTAGAAATAAACGAAGAACAGCAAAACAACGCCTACAACAGTGAGATAAATGAAGAGGAAGAACCAGATGAATCTGGAACTATAAATGACACAGAAGATGGCGCAGAAGAAGGcggagaagaagaagagaaagAACTGGACAGtgaaaaaacatacataacaaCAGAACAAActgaatttatcaaaaattatCGCAACATCATTGAACAAATCAACACCAAACGATGTCTATGTTGCAATAAAGAGTATCCTCGCAGGAAAGCTGTCATACAGCATCTGCAAAAGAATGGACACACAGTACCTAAACACACCTGCTATAATTGTGTAGTCACCTTCACTCATATCGGCGCGTTACTTAGTCACATGAGGTCCAACTCATGTACAGATTTGTGGAAAGTAATCTATGAGAAGAATGGAATCACTGAAGACATGGTTATTGATGGTCCTAGGAAGGTACAACCTAAAGATATATTCAACGCGCGGTCGTATGCTTGTAGACTGTGTCCAGCTAAGTTCCAGTTAAAGCAATCGATAATGAAACACGTGTTTGATTTCCACGAGGATGGACAGTCAGCGGTGCCACTTGGCTGCGTCCACTGTCGCGCTAGCTTCAAGGATAAGTCGTCACTGAAGAAACACATTCGCGTCGGAGAATGCACTGTATACGTCCACTGTGACCTTTGTTCCCTACAATTCATCAACATGCAACAGTTCACTGATCACGTTTCCACTGTACACGCTGATGACTTCGTCAAATCTGAGAACGAAAGTCAGAACAAATGCGTCGATGGACGGGTGACCGACTGTCCTGTATGTGGGAAAAAGAACAGCAACTATTTGAATCTGGTCAAGCATTTGAGAGTAGCTCATGGCGAAGACAAACCTCATTACTGTCAAAACTGCGACGCTAAGTTCGAACAAGCGAGTGAACTGAATAACCATATCTATGCTGAACATTCTGAGCAAGCTATGGGTGGTGCTCCTACGGAACCCGATATGTCGCTTGTCAAAGAAGAGACTGAGGAATATCATTACTCGTGCACTGAATGTAACGCCATATTCGAAACGGTCGATGCCTGGACCGACCACCAAGTCGCAGAACACAACCAGGTCGCACATCACTGCGACCAATGCGACAAAAAGTTCCTACGACCTTCAGAACTGGCTGAGCACAAAAATACTCACTTGAGAGTCAAGTTCTATCCTTGTAGTATATGTTCCAATTCATACAGCACGCCTCAGAAGTTATCAGAGCATGTACAGAACGCACATCCAGGCGTAGGAGCCAACTCTAACGCGGAAACTGAGTTCTTCTGCGACATATGCATCAGATCATTCAAAAGCCGGCAAGCGTACTCAAATCATATGCGCATACATTCTAAAGTACCCACTACTAATAGGAAGCCAGGTGAAGCGAAAGGATTCGATCCTCGTATCATCGGTAAACCAATCAAACATTTCAATGTAGTCCAACAACAACAGCAACAACAAACGCAGCAACAGCCTGGGTTTGTCAATTTCAAGCCAAATATTAATGTTCCTAATGCTCCCTACTCATGTGATATTTGTGGTAAAGGTTTTATGcacaagaaaaatatatgGAAACATAAGAAAGTGTTACATGCGGATATTTTAAATGATAGAAACGACAGTGAAGAGAATACGATGCATGCTTCAACCGAAGAGGACGAATTTAATGTTGATGAAAATGGTACAGCGCTGTCGACGCCGCAGTTCAATAGTTTCAACTTTACTAATTTCGCCAACAACGTACAACAGAATCAGCAACAAGATGCCATGCCGTTCTCTTGTGAGCTGTGTTATAAGCGATTCCCGCTCAAAACAAGTTTATGGAAGCACAAACGCGCCAAACATGGAATTGTTGGAACCGGTTCAACGAGTAGCAATGAAGCTTACGCGCAACAACCGCCGGGCGAGGGAGGGCGTTCGAGTTGTACCATTTGCAAAATAACTTTCCCCGACAAAAAGTCGTACTATCGTCACAGAAAGAATGTTCACAAATCAGCAACTCAAATGTGCAAAATATGCGGTAAACCTCTCAACAACTCCTTAGAACTTTACGAGCATCTGAAGGCTGCTCACGCCCGAGAGCTTTTGGGCTACGATCCAAATCAAGGGTCGAGCAAATCTCAAGACGTGTCCCAAGACATGGACGGAGATTACGACAACGACCAAGAAGCGACAGACCCCAGCGTGGACTACCAAGCGCGGTATCCGTGCGACACTTGCGGGAAACAGTTCGTCGGTCTACTCTCATTACAAAACCACCAATGTATTAACCAAGTACCACCGCAACCTCAAACGTTCGATTGTGAAATTTGCCATAAGAGCTACACCTCTATCGCTGCATTGAAAAGTCATAGAGGTTGGCATTTACGGTCGCCGGACGGTAAAGCGGCTGCCAACAACAGCGGTCTTTGGATGCCGCAGCACAAAGTGACAAGTAAAGTGAGCAAACACGAAGTCGTCGATCCTTCGCAGCTGGCGCGCGTCCAGCACACGACACCCGCGGCGGTGGTAGCCAAGAGGAGACTCCCGCCGGAGGTCGAGGTGACGGTCGTTAATCCCAACAAAAAACTACGTTCTGACGACTCGGTCGAAACAGATCTACAAATCAATGAGTCAATCGAAGGAAGGTACTGTGCGTTATGTGACAAAGAGTTCACAAAACGGGCTGCCTACCAGCGACACATGGACGAGGTCCACCAACCGAACTCCGTGTTCTGTCCAGTGTGCGACAAGAGTTTCACACGAAAGTCTACACTCTTGGTGCATATGAAGAAACATTACGAAGGTGGGGAGGGTAGTTCATCGAATGCGGGACTTATGGATGACGATCCTTTCGGCTGTGAAATATGTGGGACGCAGTGTGAGAACGAGAAAGCGTTGCTAGCACATAAAGCGAGGCATCACGGCGAGGACGAATCTGGGGATTCCGAGGATGACGGCAACGTGCCTATCGCTCAACCAGGAGAGTTCACTTGCGGGCAGTGCGGCGACGGGGTGGCAACGCCGCGCGACCTGATAGCCCACCGCACAATGCATTCAACCCCTACGAAGTTCTTCTGCAATATTTGCAAAGTGTATTTCGCGAGAGCATTAGACTTGTCGTCTCACACGAGGGCGCGACACGCGGACAACGACAAAGTTTTCTTCCCCTGTGCCATGTGCGACCGTTTCTACATGAATAAAAAGAGTCTACAGCGCCACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDTEPYILASKIKDCVAVQINETDNLPTNVCRKCVDNVNNWHIFKTVCEKAQNKLLSLIEKDGSLLEEVNVKSEPLSDEAYDDGVVIDGSYHDVENASASSKLQPEGPPILASLGLTPKSDKGVESDKEEEDYEDEPNEAPKTMKVPNMPEVSITVMRPTGETLHARQGIQQIASKDCLICGRTYRYSHNARRHELTSHSFDRYTNKITSKRSRTHSRSHMQPKLRPNPFNPKARLMPNPISHKMQLVSKNMAGKMIPKVLTPPKPIPIKISKTPHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNEYDQNQDEEGEMEIATTQSQNYDTLDMESDNEIEIAREQDHEGDNPENMEEDDNQTDEHLKEKEGESDNEKEELEGESQIDNDDNYDETREEDDGNDAEGNEEGENEEQDQTQIEENEYDDDGPPEGLAPVVEINEEQQNNAYNSEINEEEEPDESGTINDTEDGAEEGGEEEEKELDSEKTYITTEQTEFIKNYRNIIEQINTKRCLCCNKEYPRRKAVIQHLQKNGHTVPKHTCYNCVVTFTHIGALLSHMRSNSCTDLWKVIYEKNGITEDMVIDGPRKVQPKDIFNARSYACRLCPAKFQLKQSIMKHVFDFHEDGQSAVPLGCVHCRASFKDKSSLKKHIRVGECTVYVHCDLCSLQFINMQQFTDHVSTVHADDFVKSENESQNKCVDGRVTDCPVCGKKNSNYLNLVKHLRVAHGEDKPHYCQNCDAKFEQASELNNHIYAEHSEQAMGGAPTEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQNAHPGVGANSNAETEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGEAKGFDPRIIGKPIKHFNVVQQQQQQQTQQQPGFVNFKPNINVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMHASTEEDEFNVDENGTALSTPQFNSFNFTNFANNVQQNQQQDAMPFSCELCYKRFPLKTSLWKHKRAKHGIVGTGSTSSNEAYAQQPPGEGGRSSCTICKITFPDKKSYYRHRKNVHKSATQMCKICGKPLNNSLELYEHLKAAHARELLGYDPNQGSSKSQDVSQDMDGDYDNDQEATDPSVDYQARYPCDTCGKQFVGLLSLQNHQCINQVPPQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVQHTTPAAVVAKRRLPPEVEVTVVNPNKKLRSDDSVETDLQINESIEGRYCALCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSNAGLMDDDPFGCEICGTQCENEKALLAHKARHHGEDESGDSEDDGNVPIAQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -