Calb020243.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- clz9
- Assembly
- GCA_963082685.1
- Location
- OY720138.1:855459-858338[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-06 0.00088 19.4 0.0 1 35 8 42 8 48 0.91 2 2 1.3 4.7e+02 1.0 0.0 27 45 853 872 853 872 0.89
Sequence Information
- Coding Sequence
- ATGGctccaaaaaaaaattatacccCTGATCAAATGCGGTGGGCAATAGAAGCCGTAAAGAATGGCGAAAAAGTTGGTGTAGCAGCGAAACAATATGGTGTACCGAGAATAACACTGCATGACAAAATTACAGGGAAAACTGCATTTGGTTGTTCCATGGGGCCAAAAACTATCTTAtcaaaactgcaagaagataTTTTAGAAAGGTGGATATTAGCGATGGCTTGCAAACACTTTCCCGTAACAAGAGAATGCTTATTAGACAGTGTACAGAAGATCATCACTGACCAAAAAATACCCAATCCTTTCACCAACAATCGACCGGGGAAAAAATGGTTTAGTTCTTTCCTAAAGAGATACCCAGTTCTAACAGAAAAAGTTGCCGAAAATTTGTCAAAGGCTCGTGATAATGTATCGGAAGAACAAATCAAAACGTGGTTCGCAGAAATAAAGAACTACCTTGAAGAAAATGGACTGATAGACATTGTTCTTGACCCAAATAGGTGCTTTAACGCAGACGAAACCGCCTTTTTTTTGTCACCGAAAAAAGGCAGAGTTCTTGCTAAAAAAGGTGAGAAGCATCTGTATAGCTCCAGTGGCGATGACAAAGAGAATCTCACGGTTTTGTTTACCGGTAATGCTGCCGGGTTACTAGCCCCACCGATGATAGTTTTCGCCTATGAGAGAATTCCCAAACACATCTCTGACTCTGTTGATGAGACTTGGGGTATTGGTAAATCGGAAACAGGCTGGATGTGTAGCAGCACATTTTACGAATATATAACGAACGTCTTTAACCCCTGGCTAGAAGAAAAAGGAATCCAaaaacctattttatttttcatagatGGTCACAAATCTCATCTGACCCTTCACTTATCTAATTATTGCTCAGAAAACGGGATAGAACTTATTGCTTTGTATCCAAACTCAACACACATTTTACAACCGATGGACATTGCTGTTTTCAGACCGCTAAAAATGTTCTGGAAAAATGCCGTTTACGAATGGCAGATGGAAAATTTAGGACAGAACATAAGAAAAGAGAACTTCGCGCCAGTATTAAAAAGAGCTGTTCAAAAATTGTCGCCTGAATGTCTCAAAAACGGATTCAGAGCTGGAGGAATATGCCCCTTTGGACCAGAATACATAGATATGTCAAAAATCAAACATCTTGAGAAAGCTTCAAACTTGCCAAGGAAACCGGCACCAACAGAGTTTTTGAAGTGCTTGGAAAAAGAGATTGTCAAAGTGTTTTCCGCGGAAAAATTGAGTCTATTCAATCATTTTTACTTCAAAGACAGAGAAACGGTCGAGAATAATCTGCCTGAAGAAGACACAGCCTTGTACATCATATGGTCTAAAAATAAGCACGACTGCGGAAATGACTATGAAATTAATTCAGAGACACCTGCGATTGAGCTGGTTAACGATAGCGACCCCGAAACCACTCAAAATTATGAAACTGCATCAGCACCCAAAACTTCTGCACTACCACAACTGACAACTGGTAAGCCTATTAATGCTTTACCTAAAACGCCTCTGAATGTTTCTGAAACCACAGACGGTACCATAATGACAACAATGCCCATAAATGCTCCTACTAGTTGTTCATATGTCAATTTAGAAAACTCCATAATATCccaaaatgaaattaattcagTGACACCTGCGATTGAGCTTGTTAACGATAGCGACCCtaaaatcattcaaaattcTGAAACTACATCGGCACCAACAACTTACGCACCACCACAACCGTCAACTATTTCTAAAACTACAGCTGGTACCGTATTGACAACAATGCCAATAAATGACCCTAGTAGTTGTTCATATGTTAATTTAGAAAACTCAAGAATATCCCAAAGTATTTCAGAAGGCACGTCACATCCTACAATCGATAAACCACCAAAGCAAATAACTTCTGAGCCTTGTAATGTTATGGCTGTTGATAGAGAAAACCCCAGCACTTCCCAGATCATTTCTGAAACACCGTCGTCTTCAAACGTACTATCTGAAAGTAGCTACATAAATGATTTAAACACaccaaacaaacagacaatcGATGATACTTTGGGAATCAAAGTTCCAACTcctttcaaaaagtttttgttcTGGCCAGAAGTTGACAACAGAACGAAAAAAAGGATTAAGAGGGAAAAAATTCCATCAGCAGTTACAGGCAAAGCATGGCGAGAATATCACGAATATAAAGAAAGACAGAAGAAAAAGGaacaagaagaaaaagaagagaAAGCTAAAAGAAAACaggaaaaaaaatttttgaaaGAGAAGGATGCTGaggaaaaaagaaaaatacgtgaattgaaacaaaaaagaaaaactcaAGTCAAATCATCCTCTGATGAGTCAAATTTCGAAAtcgaatacgctgaaagtggTGACAGTTATCTTGAAAATGAAGATTGTGAGTCTGAAGCAGAGAACCAAAGATTAACTAATCAATACGGTCAAAAATTGAGTGGACATCTGTCTAAAGGACTATCAAAACGAAGAATGATACGAACACCTGAATGTGATACTGATTCAGACATGGACGTTCCATTGAATACACTATCTTCAAAAAAAATCAGAAGAATcggacataaaaaaaatattggtaaAGGGTGTTACGTTATAGTTACGTACGAAGGTGAATATTTTCCTGGCAGAGTAGAAGATGTAAACAAAAGTCAGTATGAAGTTAGTACAATGGTTTTATCAACTgggaataattttaaatggcCGGAAAAAACTGACAAGATTTGGTACAACATAAATCAAGTAATAGAAAAAATTAATGAGCCTATTTGCCTCAATAAAAGAGGGTTTTACAAGATACCGGAAATGGAAAAGTATTTGCCGGACATATAcaactaa
- Protein Sequence
- MAPKKNYTPDQMRWAIEAVKNGEKVGVAAKQYGVPRITLHDKITGKTAFGCSMGPKTILSKLQEDILERWILAMACKHFPVTRECLLDSVQKIITDQKIPNPFTNNRPGKKWFSSFLKRYPVLTEKVAENLSKARDNVSEEQIKTWFAEIKNYLEENGLIDIVLDPNRCFNADETAFFLSPKKGRVLAKKGEKHLYSSSGDDKENLTVLFTGNAAGLLAPPMIVFAYERIPKHISDSVDETWGIGKSETGWMCSSTFYEYITNVFNPWLEEKGIQKPILFFIDGHKSHLTLHLSNYCSENGIELIALYPNSTHILQPMDIAVFRPLKMFWKNAVYEWQMENLGQNIRKENFAPVLKRAVQKLSPECLKNGFRAGGICPFGPEYIDMSKIKHLEKASNLPRKPAPTEFLKCLEKEIVKVFSAEKLSLFNHFYFKDRETVENNLPEEDTALYIIWSKNKHDCGNDYEINSETPAIELVNDSDPETTQNYETASAPKTSALPQLTTGKPINALPKTPLNVSETTDGTIMTTMPINAPTSCSYVNLENSIISQNEINSVTPAIELVNDSDPKIIQNSETTSAPTTYAPPQPSTISKTTAGTVLTTMPINDPSSCSYVNLENSRISQSISEGTSHPTIDKPPKQITSEPCNVMAVDRENPSTSQIISETPSSSNVLSESSYINDLNTPNKQTIDDTLGIKVPTPFKKFLFWPEVDNRTKKRIKREKIPSAVTGKAWREYHEYKERQKKKEQEEKEEKAKRKQEKKFLKEKDAEEKRKIRELKQKRKTQVKSSSDESNFEIEYAESGDSYLENEDCESEAENQRLTNQYGQKLSGHLSKGLSKRRMIRTPECDTDSDMDVPLNTLSSKKIRRIGHKKNIGKGCYVIVTYEGEYFPGRVEDVNKSQYEVSTMVLSTGNNFKWPEKTDKIWYNINQVIEKINEPICLNKRGFYKIPEMEKYLPDIYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -