Calb007540.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- -
- Assembly
- GCA_963082685.1
- Location
- OY720119.1:5806858-5808696[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-09 1.1e-06 28.6 0.0 3 35 18 50 17 55 0.95
Sequence Information
- Coding Sequence
- ATGGCTCCACGAAGACCAATTTCGGAAAGAAAAAGGCAAATATGGTGCAAGGAATCCATGAGAAAGGCAATCGAAGATGTGAGAAGAAAGAAAATGGGCTCACTAAAGGCTTCCAAATTGTACAAGGTACCCCGAACAACTTTAAGACGTTTGGCTGCTAAAGTAGACCTCTCAGCCGAGGTTGCAACTTGTTCTAAACTTGGAAGAAAGCCAACCCTGCCAGAAGAACTAGAGAAACAATTAGTACAGTACGTGTTAGCAATGGAAGCTAAGTTTTTTGGTTTAGCACGTAAGGATGTCATGAGTCTGGCCTATCAGCTGGcaatcaaaaataatatcattcaTACCTTTTCTACTAAAAATGAAAGCGCAGGTAAAGATTGGCTAAAGTCATTTTTAGAAAGGTATCCAGAACTTTCTTTTCGCCGTCCAACAGGAACTTCGTTTGCCAGAGCTAAGGGATTTAATAAAGAGAGCGTGGATCATTTCTTTAAtctttatgaaaaattaatggATGACTACAAGTTCCCCCCAGACAAAATTTACAATGTGGACGAGACTGGAATAAGCGTAGTGCCATCCCAAATGCTCCAAGTGCTGAGTCAAAAAGGAAAACGACAAATTGGTGCTTTAACATCTGCAGAAAGGGGTTCTTTAATAACCTGCGTGATATGTATGAGCGCTGGAGGTTCATTCGTTCCACCTATGATTATATTCCCCAGGAAAAGAAGCCACCCGCTTTTAATGAAAGGTGCTCCTCCTGGTGCTATACATGAATGCCATCCATCAGGTTGGATTCAAACCAACTTATTTACCAAGTGGTTTAAACATTTCATTCAGCACGTGAAGCCCTCTAGTGAATCTCCTATACTGCTTATTTTAGATGGCCATACAAGTCACACTAGGAACCTCGAGTTAATAGATCTCGCAAGACAAAATCATGTCCACTTATTGTCGATACCTCCCCATTCTAGTCATAAAATACAACCGTTAGATAAATCATTCATGGGACCACTGAAAAAATACATGTCTGATGAAATAAAGTCATGGGTCAGAAGCAATGCACGTCCTCTAAGTCAATATGAGATGATGGAAGTATTTGGACGAGCATATTTACGAACTCAAAGTGGTGAGATTGCTGTGAGTGGTTTTCGTGCCACAGGGCTATATCCTGTTAATAGAAGTGTTTTTAAAGATCATGATTTTATAGAATTGGATAATAATGAAGCAAATATCACACCAGAATCAACAGCCTCGCCTTCTACTCCCGTAACAGAAAATGAATCCAATGAAATTACACCTTCCATTAGTCAATCTGATGAAATTAGTTTGATAACTCATGATATAATTTCAGCCAGGTCACCACAGCCATCCACTTCAAGGGATCAGAACTTTATCTCACCGTTCCAATTATCACCGATACCAGAAATAAAAGCTAGGAAAGCTTCTAATCGAGGCAGAAAGGCGGCTAAATCAACGTTACTTACTTCATCTCCTCACAAAAATGAACTACAAGAATCGTTAAAAAAGAAGCAAGACCAAACTATGGACAAAACCAAAAAAGGAAAGGGTAAAGGAAAAAAGTCGAAGGTATCTAAGGAGGTACACGTGTCAAGCTCGGAGGAAGAAAATGAACCTTTATACGCCGACAGTTCTGACGAAAGTCCAGATAGAAGCAATTTTTCTGATGCAAAGTGTTTGTATTGTGATAGTCTCTATTCTATGGATAACAGAGGTGAATCGTGGATTCAATGCCTATGTTGTAAATTATGGGCTCACGAAGAATGCTCAGGAATAgaaacatatatatttttttgcgaATTATGTTCTGCAAAGTAa
- Protein Sequence
- MAPRRPISERKRQIWCKESMRKAIEDVRRKKMGSLKASKLYKVPRTTLRRLAAKVDLSAEVATCSKLGRKPTLPEELEKQLVQYVLAMEAKFFGLARKDVMSLAYQLAIKNNIIHTFSTKNESAGKDWLKSFLERYPELSFRRPTGTSFARAKGFNKESVDHFFNLYEKLMDDYKFPPDKIYNVDETGISVVPSQMLQVLSQKGKRQIGALTSAERGSLITCVICMSAGGSFVPPMIIFPRKRSHPLLMKGAPPGAIHECHPSGWIQTNLFTKWFKHFIQHVKPSSESPILLILDGHTSHTRNLELIDLARQNHVHLLSIPPHSSHKIQPLDKSFMGPLKKYMSDEIKSWVRSNARPLSQYEMMEVFGRAYLRTQSGEIAVSGFRATGLYPVNRSVFKDHDFIELDNNEANITPESTASPSTPVTENESNEITPSISQSDEISLITHDIISARSPQPSTSRDQNFISPFQLSPIPEIKARKASNRGRKAAKSTLLTSSPHKNELQESLKKKQDQTMDKTKKGKGKGKKSKVSKEVHVSSSEEENEPLYADSSDESPDRSNFSDAKCLYCDSLYSMDNRGESWIQCLCCKLWAHEECSGIETYIFFCELCSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634390;
- 90% Identity
- iTF_00261794;
- 80% Identity
- -