Calb015893.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- -
- Assembly
- GCA_963082685.1
- Location
- OY720130.1:7974577-7976272[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 3.7e-07 30.2 0.1 1 40 9 48 9 52 0.94 2 2 6.7 2.5e+03 -1.3 0.0 16 23 125 132 121 132 0.83
Sequence Information
- Coding Sequence
- ATGCCTCGAAAACGGGCGCTGTGGTCAGAAGACGACTTGGTTTCAGCTGTTCGAGCAGTACAAAGAGGAACTTTGACTACGTACATGGCCGCAGAAAGATACAAAGTTCCTAGAAGAACAATAAGAAATCATCTACAAACTGGCAGCTTAAAGAAAACTTTGGGACGTAAACCTATATTGAACACTGAAGAGGAAGCTCAACTTGTGCAGAGGATAGTCCGGTATGCTGAAATAGGCTTGCCTGTGACACCAAGAATATTGCGTCGATTGGTGTATAAATATTGtgagcaaaaaaatataaaacacaattttaacAATATGAACAAGTGCGCAGGTAAGGATTGGTTTAAAGCGTTCATGAAGAGAAACCCTGAAATATCGATCAGAAAAGCTCAGTTCATGAACCCAGCTAGAGCccaaaaacttaataaatttattgttgaTGACCATTTCCAAAAATTAAGAGATATCTATGCTGCCGTCATAAGAAAAAAAGACaaTGAGTCGCCATCGCTCCTCAAAAATACTGGCATTATTGGAGCCATCTACAAGTTCAAACCACAATTTAGAAAATAA
- Protein Sequence
- MPRKRALWSEDDLVSAVRAVQRGTLTTYMAAERYKVPRRTIRNHLQTGSLKKTLGRKPILNTEEEAQLVQRIVRYAEIGLPVTPRILRRLVYKYCEQKNIKHNFNNMNKCAGKDWFKAFMKRNPEISIRKAQFMNPARAQKLNKFIVDDHFQKLRDIYAAVIRKKDNESPSLLKNTGIIGAIYKFKPQFRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -