Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00066 0.048 14.5 1.2 1 20 179 198 179 200 0.96

2 4 1.8e-06 0.00013 22.5 2.1 1 23 242 264 242 264 0.98

3 4 4e-06 0.00029 21.5 1.4 2 23 271 292 270 292 0.96

4 4 3.4e-05 0.0025 18.5 1.2 1 23 298 320 298 321 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00066	0.048	14.5	1.2	1	20	179	198	179	200	0.96
2	4	1.8e-06	0.00013	22.5	2.1	1	23	242	264	242	264	0.98
3	4	4e-06	0.00029	21.5	1.4	2	23	271	292	270	292	0.96
4	4	3.4e-05	0.0025	18.5	1.2	1	23	298	320	298	321	0.95

Coding Sequence: ATGTCGTGGCGCGCGCGAGTGCTGGCGCGGCGCGGCCTCCGTCGTGGTCACACATCGCGACCGTTCTCGTTATCGGACTTGGCGGACGCCGTGCGCGCCGATCATGATGAAAATGTATATATAGACGTGGACGTGTTCGACAACCTGGTCGCTCGAGGCGGGCCAGCGCGCGCTGTCATCAACGCTCGACTGGCGCCAGCACCGCCTTTGGCCACGGCACTCATATGCATAGACGCCGGCTCTCAGACAACATACGACCAACTATCGAGCCTGGATCTATCGAGCTCGCCGACTTACAAGGGATACGGCTCTCAGACTATCGGCTTGATATCCCCGACTGCATATAGCCTGGGCACGGGATCTCCGACTGCATTTATCCTGAACTCCCAGAGTATGCACATGTGTAACCTCAGGCTAAGGCTAGAGGCGGATGTGGAGCCGATGCAGGAGATATCGGTGTGGTTCGACGAGCACACGTTGGCGCAGATCGACATGCCTTTCCTTACGTTAAGGAATATCACAGGCAAAAACAAATACACGTGTCACGAATGTAGCGCGGAATTCGAGCACCCAAACTCCTTGAAGACGCATCTGTTTCTGTCTTGTCGGTCCTTCGAGCCGGATCTCTTCTGGGGGATGATACTGAGGCGGCTCCGTGCGGTGGCGCCTACCCCGGCGAGGTTGGAGGCCCTGGCTGCAGCCTGGGGACGGTCCAAGGCGGGACACGTCTGTATGTACTGCGGGAAACTGTACTCGAGAAAGTACGGACTGAAGATACACATAAGGACGCATACAGGATACAAGCCGCTGCGGTGCCGTCACTGCTCGCGCGCGTTCGGCGACCCCAGCAACCTCAACAAGCACGTGCGTCTACACGCGGCGGACGCGACGTACGCGTGCGCGCTCTGCGGGAAGCGACTGGCGAGACGACGAGACTTGCAACGGCATCTGACCTCGCACCACGCCAGCTGA
Protein Sequence: MSWRARVLARRGLRRGHTSRPFSLSDLADAVRADHDENVYIDVDVFDNLVARGGPARAVINARLAPAPPLATALICIDAGSQTTYDQLSSLDLSSSPTYKGYGSQTIGLISPTAYSLGTGSPTAFILNSQSMHMCNLRLRLEADVEPMQEISVWFDEHTLAQIDMPFLTLRNITGKNKYTCHECSAEFEHPNSLKTHLFLSCRSFEPDLFWGMILRRLRAVAPTPARLEALAAAWGRSKAGHVCMYCGKLYSRKYGLKIHIRTHTGYKPLRCRHCSRAFGDPSNLNKHVRLHAADATYACALCGKRLARRRDLQRHLTSHHAS

Sequence clustering based on sequence similarity using MMseqs2