Basic Information

Insect: Cyclargus thomasi
Gene Symbol: -
Assembly: GCA_026546445.1
Location: JAOTAV010087502.1:1-7096[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0019 0.13 13.0 0.4 1 23 318 340 318 340 0.99

2 10 0.001 0.072 13.9 7.0 1 23 347 369 347 370 0.94

3 10 0.3 21 6.1 1.1 1 23 374 396 374 396 0.97

4 10 0.0025 0.18 12.6 1.2 1 23 401 424 401 424 0.97

5 10 0.00053 0.038 14.8 0.4 1 23 428 451 428 451 0.96

6 10 0.054 3.9 8.5 0.2 2 21 474 493 474 498 0.93

7 10 0.1 7.4 7.6 0.5 2 23 546 568 545 568 0.96

8 10 0.0051 0.37 11.7 0.1 2 20 584 602 583 605 0.90

9 10 0.00019 0.014 16.2 0.7 1 23 611 633 611 633 0.97

10 10 0.39 28 5.8 0.4 1 10 639 648 639 648 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0019	0.13	13.0	0.4	1	23	318	340	318	340	0.99
2	10	0.001	0.072	13.9	7.0	1	23	347	369	347	370	0.94
3	10	0.3	21	6.1	1.1	1	23	374	396	374	396	0.97
4	10	0.0025	0.18	12.6	1.2	1	23	401	424	401	424	0.97
5	10	0.00053	0.038	14.8	0.4	1	23	428	451	428	451	0.96
6	10	0.054	3.9	8.5	0.2	2	21	474	493	474	498	0.93
7	10	0.1	7.4	7.6	0.5	2	23	546	568	545	568	0.96
8	10	0.0051	0.37	11.7	0.1	2	20	584	602	583	605	0.90
9	10	0.00019	0.014	16.2	0.7	1	23	611	633	611	633	0.97
10	10	0.39	28	5.8	0.4	1	10	639	648	639	648	0.95

Sequence Information

Coding Sequence: ATGCGCTGCTGTGTCTCGTCTTGTAATAACAACAGTCGCTTTTTATCAAAATCTTCAGGCATTACCTTTCATGTGTTTCCAACAGAGCCAACTCTGTGCAAGGCATGGTTAGTGGCACTGGGCAAAGACAACTGGTCCCCCAGAGAGAGCAGTGCAGTGTGCTCTGCACACTTTGCCCCCGAGGACATGTATGAGACTCCTGATGGACAGCGGAAAGTTAGACCTGGTGTTGTTCCTGTCTTACAACTAGTCTGCAGGATCTGTTTGGACACAGAGAGCAGAATGCTGAACATGGTTCACTACAAGTTGGATGAAGCATTTCAGCATCTCACTGGTATTATGGTGTATGAAGATAGTCTGCCTCAGCAGCTGTGTGTAGAGTGCGCTCACCGGCTGCTTAACTGTGATAGCTTCAGGCGGAAAAGTCTGCGTGCGCATGAAATCATGTTGGACATTTTCAATAAGGAAGCTGCTCTAAGCATTGACAGCCTGAAGTCAGTAGACCGAAGTACCAACAACTTGTGCACGCCTTTGAGAATAAGACACTTCGAAGTCGACAGGTATGACTTGGAAACGGAATTCGCGGAGAAAACTGAGGAGGAGCCGAAACACGAGAACAACCTAGAGATATTCCTCCCTGCCGTTCCCGACGAGGTGACGGTGAAGGACGAAGTCGAAGACGATCACGTGACGTACGACGACAACGCCTACTCGACAGACGACAGCCTGCCTCTAGAAGTGCAAAGGAGGAAGAAGAAGAAAGAGAAGAAGCAAGCGAAGAGAGTGAAGAAGAAAGCGGAGCCATCCGAGCCGAAGGTCGACAGGCGGAGGAAGCCGTTGCTGAATAGCGATCTAAGCGAGACCCTGTTCACCGTCACCGACCTCACGTACGAGGAGCAGGTGGCGGAGATCGAGAAGAGACAGGAGAGCTCCAACTACAGGAACGCCGTGTTCAAGTGTACGGAGTGCTACAAGGGGTTCCTGGACGAGGACGCGTATAGCGCTCATATGATGAGGCATACTGATGAGTGCGGTGTACACCGTTGCAGCATCTGCAAGACGCGGTTCTCGCAACGCCACGCGCTCCGCAAGCACGTGACGGCGCACCACACGCAGCGGTACAGCTGCACGGCGTGCCCGTACGTCACCACGCACAGGCAGACCGCCAGGCTACACGAGAGGTGGCACCGCGGCACCAAGTACCGCTGCCCGCACTGCCCGGAGGAGTTCGTCAAGTTCACGACGTACATGGGCCACGTCCGCATTAAACACCCCTCTGACTTCGTGTGCGCGCTGTGCGGGTACTCGTTCGTCAGCCAGAAGGGGCTGGACATGCACCGCAAGCTGAAGCACCGCTTAGGGGGCATGGCTACTGGCGGTGAGGGGGGAGGGGCGGGGGAGGTGCCTGCGGACGGTCCGCGGTGCGAACGCTGTGACGTGCGGTTCGCGAGCGGCGACGCGTACAGACGACATCTAAGCGTCTCCGCCAGGCATGCTGATGATCCAGATGCTGCTAAATCGAAACGCAGCAGGCGGTCCAAGGAGACGTCAATGGAGGGTGTGACGGAGGCGTCGGAGGGGGGTGAGGGCAAGAGACCAGAGAGCTGCGGGGGATGGCGCCGCGCCAGGGCCATACCGTGCGAACAGTGCGACCTAACGCTGGAGGACTCGCGCGCGTACCACAGCCATTTCCGGCGCGCGCATCCCGACAAGAACCGAACCAACTACCCCACCATGCGCACGCCTGTCATGTGCGAGGTCTGCGGGCGCATGTTCCAGAGCGAggccctgctgcgcgaccacaggtggacgcacacgggcgagcggccgttcgcgtgcgagtcgtgcggcaaacggttccgcatgcggcagcggctcgtcgcgcaccgccgcgtgcacgcgccgcgcagacagtacgcgtgctcgctgtgcgggaagacgttcag
Protein Sequence: MRCCVSSCNNNSRFLSKSSGITFHVFPTEPTLCKAWLVALGKDNWSPRESSAVCSAHFAPEDMYETPDGQRKVRPGVVPVLQLVCRICLDTESRMLNMVHYKLDEAFQHLTGIMVYEDSLPQQLCVECAHRLLNCDSFRRKSLRAHEIMLDIFNKEAALSIDSLKSVDRSTNNLCTPLRIRHFEVDRYDLETEFAEKTEEEPKHENNLEIFLPAVPDEVTVKDEVEDDHVTYDDNAYSTDDSLPLEVQRRKKKKEKKQAKRVKKKAEPSEPKVDRRRKPLLNSDLSETLFTVTDLTYEEQVAEIEKRQESSNYRNAVFKCTECYKGFLDEDAYSAHMMRHTDECGVHRCSICKTRFSQRHALRKHVTAHHTQRYSCTACPYVTTHRQTARLHERWHRGTKYRCPHCPEEFVKFTTYMGHVRIKHPSDFVCALCGYSFVSQKGLDMHRKLKHRLGGMATGGEGGGAGEVPADGPRCERCDVRFASGDAYRRHLSVSARHADDPDAAKSKRSRRSKETSMEGVTEASEGGEGKRPESCGGWRRARAIPCEQCDLTLEDSRAYHSHFRRAHPDKNRTNYPTMRTPVMCEVCGRMFQSEALLRDHRWTHTGERPFACESCGKRFRMRQRLVAHRRVHAPRRQYACSLCGKTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935158;
90% Identity: iTF_00405974;
80% Identity: iTF_00405974;