Ctho004465.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010004369.1:2023-8100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.12 13.2 0.9 1 23 205 228 205 228 0.96 2 11 0.0039 0.28 12.0 5.4 1 23 235 257 235 257 0.98 3 11 0.082 5.9 7.9 1.5 1 23 261 284 261 284 0.97 4 11 0.0012 0.087 13.6 0.9 1 23 292 314 292 314 0.98 5 11 7.9e-05 0.0056 17.4 0.3 2 21 325 344 325 344 0.94 6 11 0.0028 0.2 12.5 0.1 1 23 380 402 380 402 0.97 7 11 0.0094 0.67 10.8 0.2 2 21 411 430 410 435 0.90 8 11 0.00014 0.01 16.6 0.7 1 23 443 466 443 466 0.95 9 11 0.0014 0.098 13.5 4.2 1 23 472 495 472 495 0.95 10 11 0.00015 0.011 16.5 1.3 3 23 503 524 501 524 0.91 11 11 0.00046 0.033 15.0 0.4 1 23 529 552 529 552 0.98
Sequence Information
- Coding Sequence
- ATGAATTCGGTTTCAAACATGAAATGCACCGGCTGTATGAATTTTGATCGTAAAATAAAATGTATAAGCGCCGCAAGCGAAAAAGAATGCTTCTTCGAAATCATCCGGAATATTCCGATGTTTGTCCCAGACGATTTCTCGCTGTATTTGTGCTGGGAGTGCAGAGCGGAATTGTGTCGTTTTTCAAGATTCAAGGAACGAGTTACTTACTGTTACAAGCTGTTACATAGCGCTAAATTCGAAGCAAATGTAGGCAATGTATTTCGATCGAGACTGAGTATACGGGATCTATTCAATGTTGATTATGATCCTGATAAAGGTATAGAATGCTCAGATGTTATTAAAGCAGAACAACATGAACAAGAAGAATCAGAAATAAAAACAGAAGATGATTACCATTCCAATGATGAAATACCTCTTATTGAAATTAAAAAGAAGAAAGTTGTTAGTGATCATAGTAAGACTGTAAAGAAAAGAAAAAAAAAGAAAGTTCTAAATGGTCATATTGAAGTGACAAATGCTGTAGAATGTGAAGAAATAGAATTAAATGCTGAGGAGTTACAAGAAGAAAGAAAGAGATTACAAAAAGAAGAAGATTTTGTTAATGCTATGTTTAGATGTGAAAAATGTATTGTAACATTTCCCAATTCAGATGACTTAAAAGATCATATTCATGTGAAGCACGAAAAGCATGCTGCACTGTTCAAATGCAATATATGCGAGTGTGCATTCAAATATAAGTTGTCGTTTAACTACCACATGACGAGACACACAAGGAGGTTCCAGTGCACTGCCTGCAATGACAAGTTCATTACCAAGAGCTCTGCAGTCCATCATTATAACATGGCACACTGTTTGGGCAAGTCTGCGAGTTTCCCGTGCGAGTTCTGCCCGAAGGTGTTCCAGTGGCGGACGTCGCTGCGAAAACACTACGAGACCCACCGCATACAGAACGGACAGAAGCGGAAACCGACTTGCGAAGTTTGCCAATTATCGTTTACGTCGTCGGGTAATCTACAGAAACACGTCAAGTGCAGCTCCAAACACCAGATACAACTCAAACTGTGGAAGCAAAAAGAAAATGGCGAAGCTCCAAACCCTGTCGACCGCAGCGAGATGTCGCGCGCGGCGCAGCGGTTCGCCTGCGGTCAGTGCGGCGCGCGGTACCAGTGGAGGGGCAACCTTATGCGGCACATCAGAAGCCATCAGGCCAAGGCGGCAGGTTCGCTGGTGTGCGAGCCGTGCGGCCGCAGCTTCTCGTCGGTGGCGACGTACCGACAGCACATGACCATCTCCAAGAAACACGTCAGCGAGGAGGACTTCAAGTTCATGTGCAGCCAGTGCGGTCGTCGGTTCGTGAATCGCACGCGGCTGCGCGACCACGTCAACTGGGACCACCTCAAGAACTACACGCACACCTGCAACACCTGCCAGAAGGTGTTCAAGAGCCATACGTCGCTGTACCTGCACGAGCAGGTGGTGCACCGCAAGCAGCCAGACCACCTGTGCGACCACTGTGGCAGGCCATTCCCGAATCAAGCGAAGCTCCGCAGCCACGTGTTGGCGCGACACAGCGGCGCGGCGTACGAATGCGGCGAGTGCGGCGCGCGCTTCGCCTGGCAGTCGTGTCTGTCGCGACACGTGAGACGAGCACACAAACACAACGCCAAACACGCAGACACGCACGCGACGCAGACGCACGTTACGGTCGCGCACGCACACGAGCAATGA
- Protein Sequence
- MNSVSNMKCTGCMNFDRKIKCISAASEKECFFEIIRNIPMFVPDDFSLYLCWECRAELCRFSRFKERVTYCYKLLHSAKFEANVGNVFRSRLSIRDLFNVDYDPDKGIECSDVIKAEQHEQEESEIKTEDDYHSNDEIPLIEIKKKKVVSDHSKTVKKRKKKKVLNGHIEVTNAVECEEIELNAEELQEERKRLQKEEDFVNAMFRCEKCIVTFPNSDDLKDHIHVKHEKHAALFKCNICECAFKYKLSFNYHMTRHTRRFQCTACNDKFITKSSAVHHYNMAHCLGKSASFPCEFCPKVFQWRTSLRKHYETHRIQNGQKRKPTCEVCQLSFTSSGNLQKHVKCSSKHQIQLKLWKQKENGEAPNPVDRSEMSRAAQRFACGQCGARYQWRGNLMRHIRSHQAKAAGSLVCEPCGRSFSSVATYRQHMTISKKHVSEEDFKFMCSQCGRRFVNRTRLRDHVNWDHLKNYTHTCNTCQKVFKSHTSLYLHEQVVHRKQPDHLCDHCGRPFPNQAKLRSHVLARHSGAAYECGECGARFAWQSCLSRHVRRAHKHNAKHADTHATQTHVTVAHAHEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -