Ctho022302.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010080696.1:1-3380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3e-05 0.00096 19.8 1.6 2 23 115 136 114 136 0.96 2 12 1.9 1.3e+02 3.6 0.2 5 14 232 241 231 245 0.86 3 12 0.004 0.29 12.0 3.5 1 23 259 282 259 282 0.96 4 12 0.00017 0.012 16.4 1.6 1 23 286 308 286 308 0.98 5 12 0.056 4 8.4 0.8 2 23 330 352 329 352 0.95 6 12 0.0003 0.021 15.6 2.8 1 23 356 379 356 379 0.98 7 12 0.0057 0.41 11.5 0.4 2 23 402 424 401 424 0.93 8 12 1.4e-05 0.001 19.7 3.7 1 23 434 456 434 457 0.96 9 12 0.00076 0.054 14.3 1.4 2 23 471 492 470 492 0.96 10 12 0.0016 0.12 13.3 0.6 1 23 498 520 498 520 0.96 11 12 0.18 13 6.8 3.5 1 22 526 547 526 550 0.90 12 12 0.00046 0.033 15.0 1.5 2 23 593 614 592 614 0.95
Sequence Information
- Coding Sequence
- ACAATTGATCACAACAACGCGAAGTACGAAATAGATCTATCCGTCACAGAAACGAATCTCATCTCGAACAAACTTATAAAGACGACGTCTACAGTCACTATGCCTTGCGAGGGTGTTATTGAAGCGCAAACAACAAAGACATTGATAATGGAAATACACCCAATGGTTCATACCGTTGGAGTATCCAGAATTAACCCAGAAGTTATATTACCTAACAACGATGAAGCTTATGACGATATCTACGATGATTTCCAATTAAATTCGATCACAGGAGACATATTACCCCTGGAACAGGAGTTGCTGCAAGCGAAAAAGAAACTCATCATCCCAGACTACCAATTAGAATGTCCGAAGTGTCCTAAAATGTGCGCCAATAAGTATACTTTGAAGAAACATCTAAGCGTCCACGATTGCATCGAGAGGAGAGCCAGAGGTGTCATGCGGGGGATCCAAACGAGGATCGAAAGGAAAAACACGAATTTCTACGAAAAAGTCAAAGATAAAAAACAAAAGCCAAAAGGGGATATGGCACAAAAACAAATGCGAAAGGACCGCCTCGAAAAAAGGCTGCAGAGGATACAGAATTCTGAAATTGAAAAGCTATCAAAGGATATAAATAATGACAATAATTATAAGATAGAAATAGAAATTAGTGAAACAAATGACGGTGTCAAAAGGGAGGGATACGTATGTGTTTGTGGCCAGGTGTTCAAACGTAAGAGCAGGATGGAAACATGTCGTCGTTCTCATGATATCGACATGGATAGTGCCTCTCACTCTTGCGTGTCGTGTTCCAAGCAGTTTAAAGATAAGCAGGAGCTGGTAACTCACAGAAAGAGGTTACATAAAAAGAGGTTTCCTTGCAAATTCTGTCCCACCAATTACAACACTAGGAAGGAACTCTTCAAACATTTACAAATACATCAGGCAGTCCAACTGACGGAATACAAAGTTATATCAGAAGTGGTAAAGAAGAGGCAAAAAATGAAATGCTTCATGTGCAAGAACATGTATACGGAGTTATCGTTTTTGAAATCCCATATAATGGAAGAGCATAAGCCGCCTTATACTTGTCAGCTTTGTAACGAGAACTTCAGTAGAATCGTCGAGTTTTGTAATCATATCAAAACGAACCATCCGTATGTGGAAGGGCAGCCGGTTTTGGATGTTTTGGAAGCGTTCTCCAAACTGGTCAAAGCTTGGAAATGCGAGGAGTGTGATCTCCAATTCCACGAAGCCGACAAGCTTGCTAAACACCAAATTGAGCAGCATAGTCCAGAAATTAAATCAGAAGCTCAATTTCAGTGTTCAGATTGCCATAGAATGTTCGTGAGCCAGAAAGGTCTGACATCCCACGCGAGGATACATCACAGTATAGAGAATATTGAGACGGAACCGATTGCTGGAGTTATGTGCGTTGAGTGCCGAAAGATCTGCAAAGATATGGACTCTTTAACGTCTCACATGCGTCTACATTCCCTGGAACGGAAGTACCCATGCAAATTCTGCGACTTCCGGTTCACTACGCCCGAGAAGAGAAAGGCTCATGCAGAAATCCATACCGGTGATATGAAATTCGTCTGTTTTATATGTGAGTACCAGTGCAGTTCAGAGAACAGGTTGAAACGCCACAAGATGTCTTTAAAACACGCTAATATGAAGGAGTTCTTGCTGACTGGAAAGCCGCTTTTACAAGAGGAACCCTCAACTTCCAAGAAAGAGAAAGACGAAGCGAAAAAGAGAAAGAAAGATATTTCGGATGACGAAACTGAAACGATGTGTGATATCTGCGGTGAAAAGTTTTCGAGTAAAAAGAAAATGTTGAAGCATAAAGATTCGCATCCGTTTATAGAATTTCCGAATGAAGACACACCAACTAGAATATTTTTTAAATAG
- Protein Sequence
- TIDHNNAKYEIDLSVTETNLISNKLIKTTSTVTMPCEGVIEAQTTKTLIMEIHPMVHTVGVSRINPEVILPNNDEAYDDIYDDFQLNSITGDILPLEQELLQAKKKLIIPDYQLECPKCPKMCANKYTLKKHLSVHDCIERRARGVMRGIQTRIERKNTNFYEKVKDKKQKPKGDMAQKQMRKDRLEKRLQRIQNSEIEKLSKDINNDNNYKIEIEISETNDGVKREGYVCVCGQVFKRKSRMETCRRSHDIDMDSASHSCVSCSKQFKDKQELVTHRKRLHKKRFPCKFCPTNYNTRKELFKHLQIHQAVQLTEYKVISEVVKKRQKMKCFMCKNMYTELSFLKSHIMEEHKPPYTCQLCNENFSRIVEFCNHIKTNHPYVEGQPVLDVLEAFSKLVKAWKCEECDLQFHEADKLAKHQIEQHSPEIKSEAQFQCSDCHRMFVSQKGLTSHARIHHSIENIETEPIAGVMCVECRKICKDMDSLTSHMRLHSLERKYPCKFCDFRFTTPEKRKAHAEIHTGDMKFVCFICEYQCSSENRLKRHKMSLKHANMKEFLLTGKPLLQEEPSTSKKEKDEAKKRKKDISDDETETMCDICGEKFSSKKKMLKHKDSHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00934114;
- 90% Identity
- -
- 80% Identity
- -