Ctho000768.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- ZFY_2
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010010776.1:2545-4908[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1.3 10.0 0.9 2 23 84 104 83 104 0.96 2 13 0.23 16 6.5 2.2 1 23 108 131 108 131 0.96 3 13 0.13 9 7.3 2.7 1 23 139 161 139 161 0.94 4 13 0.0012 0.088 13.6 0.8 1 20 167 186 167 189 0.93 5 13 0.05 3.6 8.6 3.6 1 23 198 221 198 221 0.91 6 13 8.4e-05 0.0061 17.3 0.9 1 23 227 249 227 249 0.97 7 13 0.0003 0.021 15.6 0.5 1 21 255 275 255 276 0.96 8 13 0.00037 0.026 15.3 3.5 1 23 295 317 295 317 0.99 9 13 0.0013 0.091 13.6 0.6 2 23 323 344 322 344 0.96 10 13 8.1e-05 0.0058 17.3 0.2 1 23 349 372 349 372 0.96 11 13 4 2.9e+02 2.6 3.4 2 23 381 399 380 399 0.83 12 13 0.00012 0.0089 16.8 4.0 1 23 404 427 404 427 0.96 13 13 0.00016 0.011 16.4 0.4 3 19 435 451 433 454 0.93
Sequence Information
- Coding Sequence
- CCTGAATTTGATGAAACTCTGCAAATAAAAATTGAAAAAACATCAATTAGCGAAGATGAAGATGATAAATTTTGTGAGAATAATAACGACAAAGAACCTCCTGATGGGGATGTTTCCTTCAAATTAGATCTTACACCCCAGGAAAAAGTGGACGTCGTCAAGAATGATAAGACTAACTTCAAAATAACGAAAACAATGATAAAGGAGATCAAAGAAAAAAATAATAAAATAACATTTACGAGTGACATAACATGTTATGTTTGTTTTAAAAGTCTGTCAAGAACAGAATTAACCAAACACCTCGAAACCCACAAAGAACTGTATAGGTGTAAATATTGTGAACATGAATTGCCCACATATGACACTTTATTATTTCATATCAAAAAGGAGCATAAACAGAACCTGATGGCACAGTACACCTGCAACTTCTGTCAGCGATCTCTCAAGACGGAGAAGAGCCTTTCCTTTCACCTCGACAAGCACTTCCGACAGAAGGTTTTCGAATGCGACATATGTCACAAAGTATTGAAGTACAGGAGTAAAATGGTCAAACATATCCCCATACACGATCCCGACAGACTCGACAAGATCCACCAGTGTCAGCACTGCGGGTGGAGATTCGCCGAGAGGACGTCTTGTGTCAGTCACATAAAAGCCGTGCACGAGCTCATCAGGGACTACGCCTGCACATCATGCCCTAGCACCTTCGCGACTAAGAAGAATTTGGTGAAACATTTCAGAATTCATACGGGCGAACGTCCTTACGAATGTGAAACGTGTCGTAGGCGTTTCAGAGTTCTCGAAGGTCTCAAAAGACATCAAAATAACGGGCAGCAATGTAATAAGGTTAAGAAGGAAGGTAAAAAAAATAAAAAGAACATATACAGGTGCAAGACGTGCAACGTGAAGTTCGACCACAAGGGTCTCTATATGGAACATCTGAGGAGCCATCCTGAGACGGCGTGCGTCTGCGACCAGTGCGGCCTGGTCGTCGTCAGCTACAACTCTCTCCTGCGGCACAGACTGACTCACGCTCAACCGCGATTCGCCTGCGAGACGTGCGGTGCTAAATACAAGGTAAAAGCACAATTAGAGAGACACGTCAAAAGGATCCATCTAAACATCAAAGTTGAAAAGTCAAAGTGTGAGGTGTGCGGGAAACTTGTCGTCAATCTGAAACAGCATCTACTGACACACAACAGCAGGCGATTCACTTGTACCTTCTGCAAGAAGACGTACTCGGAACGCAAAACGTTAACGAGGCACTTGAAAGAATCTCACAGTGGTCACAAGTTGTACGGTTGTGACGTTTGTGGAAAAAGATATACCACCAAAAGAAATTTACTAAACCATAACCTCAAGTGTAGAAAAGTATAA
- Protein Sequence
- PEFDETLQIKIEKTSISEDEDDKFCENNNDKEPPDGDVSFKLDLTPQEKVDVVKNDKTNFKITKTMIKEIKEKNNKITFTSDITCYVCFKSLSRTELTKHLETHKELYRCKYCEHELPTYDTLLFHIKKEHKQNLMAQYTCNFCQRSLKTEKSLSFHLDKHFRQKVFECDICHKVLKYRSKMVKHIPIHDPDRLDKIHQCQHCGWRFAERTSCVSHIKAVHELIRDYACTSCPSTFATKKNLVKHFRIHTGERPYECETCRRRFRVLEGLKRHQNNGQQCNKVKKEGKKNKKNIYRCKTCNVKFDHKGLYMEHLRSHPETACVCDQCGLVVVSYNSLLRHRLTHAQPRFACETCGAKYKVKAQLERHVKRIHLNIKVEKSKCEVCGKLVVNLKQHLLTHNSRRFTCTFCKKTYSERKTLTRHLKESHSGHKLYGCDVCGKRYTTKRNLLNHNLKCRKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -