Ctho005779.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010078603.1:3644-7478[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.085 6.1 7.8 0.1 3 23 103 123 101 123 0.97 2 15 0.0061 0.44 11.4 3.1 1 23 229 251 229 251 0.99 3 15 0.00013 0.0096 16.7 0.5 1 23 257 280 257 280 0.96 4 15 0.29 21 6.1 6.1 1 23 285 308 285 308 0.91 5 15 3.2e-06 0.00023 21.8 0.8 2 23 488 509 487 509 0.97 6 15 5e-05 0.0036 18.0 2.0 1 23 515 537 515 537 0.98 7 15 0.8 58 4.8 6.0 1 21 590 610 590 612 0.94 8 15 4.2 3e+02 2.5 0.1 1 23 619 641 619 641 0.82 9 15 0.0033 0.24 12.3 0.9 1 23 647 669 647 669 0.96 10 15 4.8e-05 0.0035 18.1 0.1 1 23 675 697 675 697 0.96 11 15 0.0079 0.57 11.1 4.8 1 23 706 728 706 728 0.99 12 15 0.00012 0.0085 16.8 0.6 2 23 772 793 772 793 0.97 13 15 0.053 3.8 8.5 5.2 1 23 812 834 812 834 0.96 14 15 2.3e-06 0.00017 22.2 0.7 1 23 840 862 840 862 0.98 15 15 5.6e-05 0.004 17.8 5.2 1 23 868 891 868 891 0.98
Sequence Information
- Coding Sequence
- ATGATGGCTGAAGATTTTGATCCCCTGAGTTATGGCTGTACAGTTTATAATCAATTTATGAGTTGCCAAGATTTAGCAAACTCTATTCCAATAGATCAGCCTCTTACAAATAGTGCACAACAGAATCAAAATGTCTATAAGACATATGATAATCAAAGCCAACCAAACCTAGGAGAAGCACTCACAAACATTCCCAATAATGAGGATGTCAAACCTGATATCTCTGCCACAAACAGTAGGAAAAAAAACGGACGTCTCAAAAACTCATCTATTAAAATATCACAACCTGACTTCAAATTTTATGGTTGCTCCCTGTGTAACATCTGCTACCCCACTTTGCCCGAGCTGGATGTGCATGTTGCCACGCACAACGACCGAGTCACCAGCTACGATCTGAGGATTAAAAATCAAATCAGAAGGAGGAAATTAAAAAAGGAAACAAAAAAGCTTAAAAAATTAAAAGATATAGTCAAAAAAGAAAATGAACTTCTGGACATAGAAATTAAGCCCGAGGATGGTTACATTGGAACAGAAAAAGCTAATGAAATAAACAATTCTAAAGAGAATGAATGTGTTGTAGAGAAGAAAGTTACCAACGGGCAGAATGATCCAAATGAACTGAATGCTAGTGATCCAAATGAGCTTATCGCTAAGAAGCAGGAGTTGCTCAATTTACAGAAAATATATAAATGTTTTGCATGTTTTAAACAATTCTCTCTTAGCTATTACTTAAAACTTCATGTTAGATCCCACACAGATGAGAAACCTTATGTATGTGCTCAATGTGGGCAGTCTTTTATCACGGCAAGCAAACTCGGTCGACACAACAAGAGGTACCACCTCGCTATCAAGTATCAATGTAGGATATGCTACAAATTATTCTGTAGATTTGAATTCTTGACAAGGCATTTTGACAACAAACATGCAGAACACAAATTAGAAGGAGAGCCTTATGACTACAATGCTATTTTGCCATATCTAAAAGAATTAGAGGAGCAATTAAGAGAAAAGGAGGAGGAAAAAGAAAAAAAAAAGGAAAAATCTGATGCCTGGGGAGATCTGTGGCCAATGGATACCCCTGAGACACAGGAGATTAAACAGGAACAAGTTAAAGAGATAGAAGTTCCCATTAAAGAGGAAGTGTTTACCCCCGAACCAGACATTATAGAAGAGGTTAAAATAGATCCGATTGCCTCTATCGAAATAAAATTAGAGCTAGAGGAACCTCACAGGGAGGCGGAGGATTGTCACAATAATGATAGTGATGAAAACGATGATGATGATGCTATAAAGGAAGAAGGTGATGTAAAAAGAGAAATACCAAAAGTTGAAGATGATGTTGATGATGATGATGATGAGGATGTTAAGAATGAGGCGTCATCAGACGAGGACTACTTCCCGACCAATACCTGGGTGTCGAGTCCTAAAGATGAGCCTGTGACGAAGGGCAAGGGCAAGCTGGAGTGTCCGGTGTGCCACAAGACCGTGAGCTCGGCGTCATATATGCGCGTGCACATGCGCACACACTCCGGCGAGCGGCCCTACCGCTGCCCACACTGCGACCTCGCCTTCATCACAGCCAGCAAGATGCACCGCCACGCACTCACTCATCCGGAGACCTGGGAAGATGACGTCAAAACTGAGGTCAAAACAGAGACGGAAGATGGAGACACTGAAAAAAAGGTAAAAATGAAAAAAGGTCTTGCAAAGTTTCTAAAGAAGACTAAAGGTGGGGAAAAGAAGAAGAATGGGTATCAGAAGCGACCATACTCCTGCGAGTTCTGTCAGAAGAGGTTCCTGCACCAGGCTACTTTACAGGTTCACAAGAAGTGTCACGAGGGTGAGGCGCTGGTGTACAAGTGCACGTACTGCCTGGTGGAGCAGCCGGACGACGCGGCGCTGCGGGCTCACGAGCTCACCCACACCGGGCCCAAACCCTACTTGTGCACCGTCTGCGGCCGCACCTACGCCAAGCGCGAGACCATGGTCTACCACCGCAAGTCGCACGCCGAGCACTCGCCCTACATCTGCGACGTGTGCACTAAGGGGTTCTCGTCCGCCGGCAAGCTGGAGCGCCATCTCGCCGGTCACCGAGCCGCGCGCTTCGTGCTGCGGTACGAGTGCCCCGTCTGCGCGCACATGTTCCACACACGCTACCACGTCCAGCTCCACCTCAACACGCACCAGCGCGAGGGCCTCATCCGCGAGGCGGACCGCCCGCACGTCCTCGCCATGGTGCTGCAGAACGCCCGCCGCCTGCCTCGCGCCGGCGCCGCCGACCCCCCGCCCGCGCCGCCCGACGAGCGCAGCCGCGTCTGCAACATCTGCGGAGAGGTCTTCCAGCACTTCTACTACCTCGAGGAGCACCTCAAGTCGCACGGCTCCCGCATCGCCGTCGCcgacgccgcgcccgacccgcccgacgaccgcaagcacgtgtgcgccgtctgcagcaagagcttcaagctgcactactacctcaagctgcacagcttcacgcacaccaaggagaagccttttatctgccaacagtgcgggaaggggttcatcacgcgcggcaaactcaagcgccacctggagacgcactcggggctcaagaaataccagtgccacatctgctgcaagttcttcacgcggccgagctacctgcgcatccacgtgcgcaccatacacggcACTCAGGATTACAACTTCCGCCTCGCCGCTCCCCGTCCCCCTCCCGACGAGTACTCGTCTCTCGCCGCGCCCCGCCCCCCGCTCGACGAGTACCCGCCCCCAGCGCAGCCCCCCTGCTAG
- Protein Sequence
- MMAEDFDPLSYGCTVYNQFMSCQDLANSIPIDQPLTNSAQQNQNVYKTYDNQSQPNLGEALTNIPNNEDVKPDISATNSRKKNGRLKNSSIKISQPDFKFYGCSLCNICYPTLPELDVHVATHNDRVTSYDLRIKNQIRRRKLKKETKKLKKLKDIVKKENELLDIEIKPEDGYIGTEKANEINNSKENECVVEKKVTNGQNDPNELNASDPNELIAKKQELLNLQKIYKCFACFKQFSLSYYLKLHVRSHTDEKPYVCAQCGQSFITASKLGRHNKRYHLAIKYQCRICYKLFCRFEFLTRHFDNKHAEHKLEGEPYDYNAILPYLKELEEQLREKEEEKEKKKEKSDAWGDLWPMDTPETQEIKQEQVKEIEVPIKEEVFTPEPDIIEEVKIDPIASIEIKLELEEPHREAEDCHNNDSDENDDDDAIKEEGDVKREIPKVEDDVDDDDDEDVKNEASSDEDYFPTNTWVSSPKDEPVTKGKGKLECPVCHKTVSSASYMRVHMRTHSGERPYRCPHCDLAFITASKMHRHALTHPETWEDDVKTEVKTETEDGDTEKKVKMKKGLAKFLKKTKGGEKKKNGYQKRPYSCEFCQKRFLHQATLQVHKKCHEGEALVYKCTYCLVEQPDDAALRAHELTHTGPKPYLCTVCGRTYAKRETMVYHRKSHAEHSPYICDVCTKGFSSAGKLERHLAGHRAARFVLRYECPVCAHMFHTRYHVQLHLNTHQREGLIREADRPHVLAMVLQNARRLPRAGAADPPPAPPDERSRVCNICGEVFQHFYYLEEHLKSHGSRIAVADAAPDPPDDRKHVCAVCSKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHSGLKKYQCHICCKFFTRPSYLRIHVRTIHGTQDYNFRLAAPRPPPDEYSSLAAPRPPLDEYPPPAQPPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178882;
- 90% Identity
- -
- 80% Identity
- -