Ctho017559.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010078515.1:1-6406[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.022 1.6 9.7 1.3 1 20 136 155 136 159 0.88 2 21 0.016 1.2 10.1 0.7 2 23 185 207 184 207 0.95 3 21 0.00018 0.013 16.2 0.8 1 23 229 251 229 251 0.98 4 21 0.014 1 10.3 1.3 1 23 255 277 255 277 0.83 5 21 0.41 30 5.7 1.2 1 23 281 304 281 304 0.91 6 21 0.094 6.7 7.7 1.9 1 23 349 371 349 371 0.95 7 21 0.012 0.86 10.5 0.4 3 23 401 422 399 422 0.95 8 21 0.11 7.9 7.5 0.3 2 23 443 465 442 465 0.92 9 21 0.00069 0.049 14.4 2.5 2 23 471 493 470 493 0.95 10 21 0.0015 0.11 13.4 1.2 1 21 498 518 498 521 0.90 11 21 0.15 11 7.1 0.3 2 23 524 546 523 546 0.94 12 21 0.003 0.21 12.4 1.2 2 22 553 573 552 573 0.95 13 21 0.0052 0.37 11.7 0.5 1 23 632 655 632 655 0.93 14 21 0.34 25 5.9 0.6 3 23 684 705 682 706 0.93 15 21 0.083 6 7.9 0.1 3 23 729 751 727 751 0.94 16 21 0.00076 0.055 14.3 0.4 3 20 758 775 756 779 0.90 17 21 0.022 1.6 9.7 0.4 1 23 784 807 784 807 0.97 18 21 0.0028 0.2 12.5 0.9 2 23 813 835 813 835 0.94 19 21 4e-05 0.0029 18.3 4.9 1 23 839 862 839 862 0.97 20 21 0.00018 0.013 16.2 0.6 2 23 869 890 868 890 0.96 21 21 0.0032 0.23 12.3 2.4 1 23 896 918 896 918 0.97
Sequence Information
- Coding Sequence
- CTGGCATACAAGGATCCTGTGAAAGTAGAAGTTAATGCCACTGAAGACATGGATACAGAATATCTCGATGAAGATATGGGCTTtgataatgATAATCTAACTGAAAAAAATGTAGAGATAGACACTCCTTCCGAAACTGATTTGTCTGTGTCAGTGTTAAAACGAAAAAGAGGAAGACCAAAGAAGATTGAGACTAAAATAGAAAAAAAAGAACCAATAAAAGCTAAACCAAAAGAGAAACAGAGAATGTCTAAAGGTGTGAAATCTCAAGACACACCCAAAGTTACTAAGTCAACAAAAAAGTCTTTAATGACCACAACACACCGCAACCGTCTGATGAAACGTAACGCTGTGACTATCATAGAATCCTCAACTGTGTTCCCATTCAAATGGCATCGTCACAACTATCTATGTTTTTACTGCCACAAACCATTTAAAGAGCTGGAACTATTGAGGGAACATTCTGGAAACGAGCATAAGAAACCGAACGTCGAGTCCGCCGTTTTATATCTAAAGAGAGATGAGAAAGTCAAAATTGATATAACCGAATGCGTTTGTAGACTGTGCGATAAGGCGGTAGACAATTTAAACACCCTTATCGATCATCTTAGAAATACACATAATAAATACTTTGAAGAGGCATGCGGTTTCGGGGTCGTTCCCTATAAACTCTCCCGAAACGAATATCAATGTGCAATTTGCCCCAAGACGTTTCAGTATTTTATCAAACTTAACCAACACATGAACGACCATTTCGGCCTCTACGTTTGCGAACATTGCGGCAAATCTTTTCTCACTCAGGACCGCCTGCGGTTCCACGCCATCTCTCACGGCTCCAACTTTAAATGTTACTCGTGTACGGAGACCTTCGAGTCGCTCGCTCAAAGAACGAGCCACGAGCTTCAGCAGCATAACAGAAGAAGACTgatcaagtATTTAAAAACGCAGAAAAATAAAGGCGAATGTTCGTCGATGCGTAGACGAAAAAATCTACAGTTACTATTCAATAACACCACAGTTATACCATTTAAGTGGCGCGGGAGATACCTGTGCTTTTATTGCAGCAGAGGTAACTCAGATTCCACCGAACTAAGAAAACACACTAAATCACACGGTCCCTGTTCCACCAAAGACCATTCCCTGAAAGTACTTAAAGGTGGAAAAAATATGGAGATAAAAATCGACGTATCTGAAATTATCTGTGAGATTTGCAACGAACAGTTCTCAAAATTAGATACAGTAATAGAACATTTGTGCAGAGAGCATAATATGAAATACGATAAGGACGTCGACATGCCGATCGAGCAGTACCGACTCTTAGATCTGAGCTGCTTAACGTGCAGTGAAAAATTCACGTATTTTGGGTACCTCGTGTCGCATGTAAACGCCAGTCATCCGAAAATATGTCTCGTATGTGATAAATGCCAGCAGAAGTTCAATAAGAGAAGAGATTTGTTCTCTCACATGAAGAATTACCATCGAGAAGGAGGATACAAGTGCGACATTTGCTCCCAAAGCTTCACGTCCTTGAATGTGCTGAGAAAACACAACGACAATCGCCATTTGACGACATGCAGCATTTGCAGCTTGAAACTACCTTCTGCTTCTTTAAAACAAAAGCACATGGAATTGGAGCACCCCGACGATGGATGTCTGCAATGCGAAATATGCTACAAAGATTTCCATACGAAACAAGGTTTGAAAATGCACCTGAGAAAGTGTAAAGGTGAAAACGTAGTATTCGATGTCGGCGTTAAGAAAGAAGACAATGCTTTGGATTCCGATATTCTCTACGAAGCGGCGAAGCGACCCAGTGTAAAACAAATCAGAGAAAACATCGTAATAGTCATTAATATGTCTACGGCGATACCGTTTAACTTTTACAAAAATAAATTTAATTGCTTCTATTGCTCCAAAGATTTTCCTGACTCCGATCTCATGAGAGAACATACCGTAATGGAACATCCTTCCTGCGATACGAAGGCGAAGTGCATTAGGAAATGCCGCGAGTCCGTTGCCTGCGTAAAAATAGACATATCGTCTCTCGCTTGTAAGATTTGTTTCGAATCCATGAAAGATTTGGACTCCTTGCTCGATCACCTGACAATCAAACACCATGCCAACTATGATAAGTCCATCACTACTTGCTTACAGCCCTACAAACTCATAAAAGACCACATGGCATGTCCGAACTGTCCTAATGAGGTGTTCAGGTTTTTCGGAACACTGCTCAAGCACATGAACAACGTGCACACGAACAACAACATAATATGCGTTTACTGCGGACAGACGTTTAGAAGGGACGAGAATCTGCGAGTCCACGTGTGGCGACATCATAGGGACGGCAGGTTCAGGTGCAACATCTGTGGCGCCGACTGCAACATACCGTCGAGATTATATATGCACATGGCGAAAGTCCACGGCATCAAGGCCGCGAAATGTACCAAGTGTTCGGAAACATTCGCCACCCAGTATCTCCGCCAAAAACATCTCATCGAGGTGCACAATTCGGGCCACAAGTGCACGTACTGTGGCAAACTGTTCACTCGCAACTCTTTTATGAGAGATCACATAAGGCGAACCCACTTAAAGGAGAAGAATGTGGAGTGCTCCATCTGTAACATGAAGTTTTTTAATAATATCCTCCTCAGGAGACATATGGTGAAGCACAGCGGGGAGAAAAACTTCCACTGTGAAATGTGCGGGGAGAGGTTTTATTGGAGGAAGAGCCTTCGAAGTCATATGGCTAGACATGGGAAACACAATTAA
- Protein Sequence
- LAYKDPVKVEVNATEDMDTEYLDEDMGFDNDNLTEKNVEIDTPSETDLSVSVLKRKRGRPKKIETKIEKKEPIKAKPKEKQRMSKGVKSQDTPKVTKSTKKSLMTTTHRNRLMKRNAVTIIESSTVFPFKWHRHNYLCFYCHKPFKELELLREHSGNEHKKPNVESAVLYLKRDEKVKIDITECVCRLCDKAVDNLNTLIDHLRNTHNKYFEEACGFGVVPYKLSRNEYQCAICPKTFQYFIKLNQHMNDHFGLYVCEHCGKSFLTQDRLRFHAISHGSNFKCYSCTETFESLAQRTSHELQQHNRRRLIKYLKTQKNKGECSSMRRRKNLQLLFNNTTVIPFKWRGRYLCFYCSRGNSDSTELRKHTKSHGPCSTKDHSLKVLKGGKNMEIKIDVSEIICEICNEQFSKLDTVIEHLCREHNMKYDKDVDMPIEQYRLLDLSCLTCSEKFTYFGYLVSHVNASHPKICLVCDKCQQKFNKRRDLFSHMKNYHREGGYKCDICSQSFTSLNVLRKHNDNRHLTTCSICSLKLPSASLKQKHMELEHPDDGCLQCEICYKDFHTKQGLKMHLRKCKGENVVFDVGVKKEDNALDSDILYEAAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVMEHPSCDTKAKCIRKCRESVACVKIDISSLACKICFESMKDLDSLLDHLTIKHHANYDKSITTCLQPYKLIKDHMACPNCPNEVFRFFGTLLKHMNNVHTNNNIICVYCGQTFRRDENLRVHVWRHHRDGRFRCNICGADCNIPSRLYMHMAKVHGIKAAKCTKCSETFATQYLRQKHLIEVHNSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCEMCGERFYWRKSLRSHMARHGKHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -