Ctho017560.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010078515.1:7674-10557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8 5.7e+02 1.6 4.0 1 23 27 50 27 50 0.87 2 21 4.4 3.2e+02 2.4 9.0 3 23 57 78 55 78 0.85 3 21 0.018 1.3 10.0 1.9 1 23 84 107 84 107 0.91 4 21 1.9e-05 0.0013 19.3 0.6 2 23 113 135 112 135 0.93 5 21 0.027 1.9 9.4 0.1 3 20 141 158 140 160 0.91 6 21 0.00079 0.057 14.2 1.2 1 23 192 214 192 214 0.98 7 21 0.0034 0.24 12.2 0.1 2 23 242 264 241 264 0.95 8 21 2.5e-05 0.0018 19.0 0.4 2 23 285 307 285 307 0.97 9 21 9.6e-05 0.0069 17.1 1.2 1 23 312 335 312 335 0.96 10 21 0.0017 0.12 13.2 0.4 1 23 340 363 340 363 0.96 11 21 2.8e-05 0.002 18.8 1.2 3 23 367 388 366 388 0.97 12 21 0.13 9.3 7.3 2.8 2 20 395 413 395 415 0.95 13 21 0.0025 0.18 12.6 1.8 1 23 471 494 471 494 0.96 14 21 2.8 2e+02 3.1 0.0 2 23 522 544 521 544 0.91 15 21 0.0048 0.34 11.8 0.1 2 23 567 589 566 589 0.95 16 21 1.1e-06 7.9e-05 23.2 0.2 3 23 596 617 595 617 0.94 17 21 0.0091 0.66 10.9 6.4 2 23 622 644 621 644 0.94 18 21 0.00074 0.053 14.3 3.0 1 23 649 672 649 672 0.97 19 21 3.3e-05 0.0024 18.6 5.3 1 23 676 699 676 699 0.97 20 21 0.00042 0.03 15.1 1.2 2 23 706 727 705 727 0.96 21 21 3.4e-06 0.00024 21.7 0.4 1 23 733 755 733 755 0.98
Sequence Information
- Coding Sequence
- ATGGAATGTCTGGATTTAAGAGAACATACAATCGTCGAACATCCAGTTTGTGACGTGAAACATAAAAACAAAGATAAATACCCCTGTCCGATCTGTGAGAAAGAGCATCTGCACTTCCGCAATTTGTTGAGCCACATGTGTCAGGAGCACACGGAGAACAAACATTTATGCATGCATTGCGGCAAGTCTTTCCGAAACGCGCCATGCTTCCGGTTTCATTTGACGAGTTGCCACAGGACAAAGGGTACTTTTAAATGCGATATTTGCAATAGAGAGTGTTCCTCGAAAAAAATTTTACAGACTCACTTAGGGAATGAACATTACATCAAAAGCGTCAAATGTAACGAATGCAAAGAGAAATTCACGACGAGATATTCCTTAAGCAGACACATCATAGACGCGCACGGCTCCGGGAACATGTGTCAGTATTGCGGGAAACTGTTCACCAGCAACTACTTTGTAGTGGAGCACATTGATGAATTCCAAGACATCAGCATCTCTAAACGCAGAAGGAAAAATTTGCAAATTATCTTCAATAACACGTCCATAATTCCCTTTAAATGGAGAAGACGATATGTTTGCTTTTACTGCGGTAAAGCGTATGCCGAATATTTAGAGTTCAGAAAACACACAAAATCTCACGGAATGTGCTCGACGAGCGATTACGCGTTGAAATTGATTAAGGGGAGGCACTCGGAAGTTAAATTAGATATATCGGAGATTGTTTGCGAAATATGCAATAAAACATTTCAAAACTTTAAAGATATTGTTGATCACCTTATCACAGAGCACAAGTTCGAGTACGAAGAGGACGTCGCTACTCTGATTCAGGAGTATAGACTTATTGATAACCGTTGTCAATATTGTGATGAAGAGTTTACTTATTTTGGAAATTTAGCAAATCACATAAAAACCTTACACTCACACAATGATTTTATTTGTGATAACTGCGGTGCAACCTTTAATAAGAAAAGAGATTTAGCGGTTCACCTCCGTCACTACCACCGCGATGGTGGGTACCCCTGCGATCTGTGCACGGAAATATTTGAGTCTCAAATAATGTTAAACAAACATAAAAATAACTTCCATTTAAGAAATTGTAAAGATTGCAATACAAGTTTTCCGTCTTACACACTACTACAAAAACACATCAAGCGAGACCACCCCGCTGACGGTAATCGAAAATGTGCACATTGCCTAAAAGAGTTTCATTCGTCGCAGGGGCTCAAACACCACATCGGTAAGTGCAAAATGAAAATGGAAGTGAAAGTCTCGTACAGCACAAACTCGAGTATAACAGAAGATAACAGATTAAAACCGAGAAAGAAGCAGGATACTTTGCAAATAAGGAAAAATATACAAACGGTTTTAAACTTAACGACGGCCGTACCGTTTATGTTTTTTTCTAAATTCTCCTGTTTTTACTGTTCCAAAAAGTTTGTCGAGTTTGAAGATCTTAAGGAACATACGTTAAAGGAGCATCCTGTCTGTGACCTGAAAGGTAAATACTTAAAAAGATGTAAAGGCGAACGAATCACCGTCAAGGTAGATGTATCATCGTTGTCCTGTAAAGTCTGCCGACTACCAATCGAAGGCTTCGATAATTTAATAGAGCACATTATCAATAAACACCAATCACCTTACGATAAGTCCATATTGGGTTGCTTGGAGCCCTTCAAAGTGATTAAAGACAACACGCCCTGTCCGCTCTGCTCGAAAGTCTTCCGATACTTCGGTATTCTCCTCCGACACATCAACTCCGACCACAGCAATAACAACAGGATCTGTGATTTCTGCGGGAAGAGTTTCAAGAACGCGTCGAATTTGAACGTGCACATAACGTACGCGCACACCGGATCTTGCGAGTGCGAAATTTGTGGAACTAAATTCAAAAATCAGTGGTGCCTGGGACGGCACAGAGCCAAGTGTCATAACGCGAAGGATTTCAAGTGTCCGAAATGTCCGGAGCAATTCCAGAGCCAGTACCACAAACAGAAGCATCTCATTAAGGTCCACGAcatcgggcacaaatgtagctactgcgagaagatgttcaccaggaactcgttcatgaaggatcacattcgtcggacgcacttgaaggagaagaacgtggtctgctcggtctgcaacgagaggttcttcgacaaccacctgttgaggatgcacatggtgaaacacaagggcgagcgaaggtttacctgcgatgtgtgcggcaaggctttcctgcgtcgtagcaatctgagctcgcatatggaaatgcataAGAAGTATGGCCACGTTAACGCATTATAG
- Protein Sequence
- MECLDLREHTIVEHPVCDVKHKNKDKYPCPICEKEHLHFRNLLSHMCQEHTENKHLCMHCGKSFRNAPCFRFHLTSCHRTKGTFKCDICNRECSSKKILQTHLGNEHYIKSVKCNECKEKFTTRYSLSRHIIDAHGSGNMCQYCGKLFTSNYFVVEHIDEFQDISISKRRRKNLQIIFNNTSIIPFKWRRRYVCFYCGKAYAEYLEFRKHTKSHGMCSTSDYALKLIKGRHSEVKLDISEIVCEICNKTFQNFKDIVDHLITEHKFEYEEDVATLIQEYRLIDNRCQYCDEEFTYFGNLANHIKTLHSHNDFICDNCGATFNKKRDLAVHLRHYHRDGGYPCDLCTEIFESQIMLNKHKNNFHLRNCKDCNTSFPSYTLLQKHIKRDHPADGNRKCAHCLKEFHSSQGLKHHIGKCKMKMEVKVSYSTNSSITEDNRLKPRKKQDTLQIRKNIQTVLNLTTAVPFMFFSKFSCFYCSKKFVEFEDLKEHTLKEHPVCDLKGKYLKRCKGERITVKVDVSSLSCKVCRLPIEGFDNLIEHIINKHQSPYDKSILGCLEPFKVIKDNTPCPLCSKVFRYFGILLRHINSDHSNNNRICDFCGKSFKNASNLNVHITYAHTGSCECEICGTKFKNQWCLGRHRAKCHNAKDFKCPKCPEQFQSQYHKQKHLIKVHDIGHKCSYCEKMFTRNSFMKDHIRRTHLKEKNVVCSVCNERFFDNHLLRMHMVKHKGERRFTCDVCGKAFLRRSNLSSHMEMHKKYGHVNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -