Ctho002055.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010019408.1:187-2388[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-09 4.3e-06 26.7 0.1 1 42 14 54 14 58 0.86
Sequence Information
- Coding Sequence
- atgccgcgatacaaaagtaaaggtattcggagtaattggtcagaagatgacatgaaacgagcaattgccgctgtcaaaggtggtgtgaagatatacacggctgccaaaaactataacatcccaaggcgcacgttaagacgttatttattagagaaaaagactacgaagtctactttaggcagaaagccgcttttaaacgaagcacaagagagagatttggcttcccgtattatccgtttatgccatgtggggtatccgctaacacaacgggtactacgcacttgtgtcaagacgttttgcattcaaaacaatgtttcagtatcgagtcgaggcttgatggttggacgagattggctaagaggttttctaaatcgacataaaaatatcagtagaagaaaatctcaaaatctgaacccggcacgcgccgcaaagctgaataaagtcgtagttgctgactattttgccaaattaaaaaagactatggaagaaaacgacgttttgaataaacctgagagaattttcaatgtcgatgagaaaggctgtcagcttaatttacataaagcaccacaagttttagcggaacgtggaacaaaaagagtacacctagtggcgcaggaacatggtgaaaatgtgactgtagtctcatgtggcagcgctttaggccacgctatccccccaatgattttgttcaagggcaaaagaatgaaacctgaatggattgattctttacctacagggtcaatagctcaaatgactcccaaaggcagtatgaatactgaaacgttcgtgaactggttacaccacttcgccaaatttaaactatcaggaccttgtgttcttatctttgacggagctaaatgccatctggactataccatagttgaagttgcagagaaattcaatataaaacttttctgtcttcccagcaacacaacacatgagctgcagccgatggacaaatcggtttttcgttcgtatgagtattattgggatgaggaggttctgaggtactggtctatcaaccaggatcgtaaaataacgaaacaaagatttggaattatattttcaaaggtgtgggacaaggctgcaacgccggcaaatatcagagctggtttcgaggctactgggatttttccatttgatccgcaaaagattcccgaagaagcgtatgctccaAGTATCCCAACATACGATCCCACAATAACTGAATCTAATACTGGACAAAACGAAAATGAAGATCCTAATGATATTACTGATTCAAGTGTTGACAGTGAAAGTATTTTAGCTTGTTCTCATCCTAATTTGAACATCAGCGGTGATCGTTACACTCCAGTTCAAAGTGGTCCCTCTGGCACCAATGCTAAATCACCAGTACGTGCCTTGTCACAAGACAATGATAGTGACGCCACAGATGCGAGTGATGTTAACCCGATTCCTGTCATCTCAGATAACAACCTCGAACCTAATACGCAATCATTTCAAAATAACAGTTCACTTAATAACATAGCTACTGCACCTTCTTCACCTTCGAGAAATGATCAACTTAAGCTCGGTGAAAATATTCGTACTGAAGGTGACGATAGCGACGATGACGTCCCATTAGCAAGCTTGAAACAGAACAGCCAGAACATAGAAGCTGTAAAGGCAGTTTCGGATTTacttaatgaatcatatgaatctttcagtgctatgttaaaaactccggaaaagacaacatctagcccaaagactgctccgagggcaaaagccattaatagtctggctcaagaactaacgaaagcaacttttgtacaaaaaaaattgccaggtccgtccggagcagcttctcagaaaagaaaCACTTTGCCAGGGTCATCGAATAAAACTTCAAAAAAGAAGAAAAGTACATCAAAGTCATCCTCAGCTGCCTCTCaaaaaaagaatgatattcctggaccatccaacattactttaccaaaaagaaaacaagatccttcaaaaaggaatagagcctcatcaaacaagattccttcaaaaccgaaaagtggtaaaggaaaagctagaaaacttggtgagtcttggtattgcttcgtttgtgatcaagatagagttgctgacatgcgatcttgttttaaatgtggttcctatgtccatgaagagtgcgttggtttgtctgccgaagatacagaaaattttatatgtccccaatgttatgatgattaa
- Protein Sequence
- MPRYKSKGIRSNWSEDDMKRAIAAVKGGVKIYTAAKNYNIPRRTLRRYLLEKKTTKSTLGRKPLLNEAQERDLASRIIRLCHVGYPLTQRVLRTCVKTFCIQNNVSVSSRGLMVGRDWLRGFLNRHKNISRRKSQNLNPARAAKLNKVVVADYFAKLKKTMEENDVLNKPERIFNVDEKGCQLNLHKAPQVLAERGTKRVHLVAQEHGENVTVVSCGSALGHAIPPMILFKGKRMKPEWIDSLPTGSIAQMTPKGSMNTETFVNWLHHFAKFKLSGPCVLIFDGAKCHLDYTIVEVAEKFNIKLFCLPSNTTHELQPMDKSVFRSYEYYWDEEVLRYWSINQDRKITKQRFGIIFSKVWDKAATPANIRAGFEATGIFPFDPQKIPEEAYAPSIPTYDPTITESNTGQNENEDPNDITDSSVDSESILACSHPNLNISGDRYTPVQSGPSGTNAKSPVRALSQDNDSDATDASDVNPIPVISDNNLEPNTQSFQNNSSLNNIATAPSSPSRNDQLKLGENIRTEGDDSDDDVPLASLKQNSQNIEAVKAVSDLLNESYESFSAMLKTPEKTTSSPKTAPRAKAINSLAQELTKATFVQKKLPGPSGAASQKRNTLPGSSNKTSKKKKSTSKSSSAASQKKNDIPGPSNITLPKRKQDPSKRNRASSNKIPSKPKSGKGKARKLGESWYCFVCDQDRVADMRSCFKCGSYVHEECVGLSAEDTENFICPQCYDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072729; iTF_00072730; iTF_00072732; iTF_00072733; iTF_00072731;
- 90% Identity
- iTF_00072729;
- 80% Identity
- -