Ctho005854.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010000004.1:112462-115728[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-10 2.9e-07 30.4 0.0 2 39 127 165 126 169 0.90 2 2 1e-05 0.018 15.1 0.1 1 27 180 206 180 206 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGATTGCAAATCGGCCAAATGCGAGCCAACGTCAGAAGATGATATTAACCAGGGTACTCTAGAGGAGTTAGCGCCAGCGCCCGCGGGTCCCGCCGCGACGCCGGTAAAGGAGCACCTGCCATCACCAACGGAGGCGTCGTTGGCGATCCTGCAGCCTGCACCTCTGGGAAACACTATGGGTAGTTCAATAATCGACATGCAGGCGAAGATGATGAGCGCGACGGAGGTTGCTGACTCCGGGGACTTCGTGCCTCTCATGGCGGTCAAAGATGAACTATCTGAGAATGAGCAGCAACAAAGCAGTGACGATACCAGCGACTCCGCCCCGGAGCAGGCAGTTGGCCGCGGAAGCCCTAAGGCGTGGTCGCCGCAGGACATGGACAGCGCCCTCGACGCGCTGAGAACACAGAACATGACTCTCACTAAGGCTTCAGCAACGTTCGGAATTCCGTCGACAACGCTATGGCAGCGCGCGCACCGCCTCGGCATAGATACGCCGAAGAAGGACGGCGCGTCAAAATCTTGGAGCGAGGACGATTTAAAGGGGGCGCTGGACGCGTTGCGAGCTGGAACTATATCCGCTAACAAGGCTAGCAAGGCTTATGGTGAGAAGGAATAG
- Protein Sequence
- MPGYDCKSAKCEPTSEDDINQGTLEELAPAPAGPAATPVKEHLPSPTEASLAILQPAPLGNTMGSSIIDMQAKMMSATEVADSGDFVPLMAVKDELSENEQQQSSDDTSDSAPEQAVGRGSPKAWSPQDMDSALDALRTQNMTLTKASATFGIPSTTLWQRAHRLGIDTPKKDGASKSWSEDDLKGALDALRAGTISANKASKAYGEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -