Ctho000241.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010048583.1:1-4553[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.017 30 4.8 0.0 27 39 36 48 33 51 0.87 2 3 3.7e-15 6.5e-12 45.3 0.3 2 45 66 109 65 109 0.96 3 3 1.1e-17 2e-14 53.4 0.0 2 40 117 156 116 158 0.93
Sequence Information
- Coding Sequence
- GAGACGAGGCGAGTGCTACCGCTTACACTCTCGCAATCTGAGTCTGGGTGGTCTTACTCTGTCTCGGCGAGAGTGTACATCCACCACAACAATCGTCGTGCTATAGGTATCCCCAGCAGCACCCTGTACAAGATAGCGCGTCGCGAGGGCATCCGTCTAGCGGCGCCGTTCAACGCCGCTCCCACCGCGTGGCGCCGCGCCGACCTCGCGCGCGCGCTCGCCGCCGTGCGTGCGGGCGCCGCCGTGCAACGTGCAGCGTCACACTACGGAATACCTACCGGAACTCTGTACGGGCGGTGTAAGCGAGAGGGAATAGAGCTGTCTCGCTCTAACCCGACGCCGTGGTCGGAGGGCGCGATGGAGGAGGCGTTAGAAGCTGTAAGGGTCGGGCAGATGTCGATCAACCAGGCAGCGATACATTTCAACCTACCGTACTCGTCGCTGTACGGCCGATTCAAACGCTGCAAGATCCAGCCGCCCCAGGGTATCCAGCCGACGAGTCACATGGAGTTCTCCGAATCTAGGGATCACCAGTTCTCCCCGGACATGATATCCGGTTTGGACGATATACACCGGACGTATACCCTGGCGGACATACTAGACGTACAGTCGCACACACAAGAGTCCAACGATGACCTTCCAACGATTACCACATCGGAACAGTCGCAGCTGATTCCGTATGTACAGTCGCGATCACCAGACATGCATAAAACACAACACCAAGAGGCGTCGAACGATGAGCTGCAAGCTTCTCATGCGTCTGTGGTACATTCGCAGCTAACTTCTTATGTACAGCCGCAGTCAGACACCATAAAGCGACAAGATATTCAGGTACCGTTAAATGAAGGACTACTGCAAATGTCGCCTGTACAGTCACGGACACTAGTTAACTCGTACGTACAGTCGCGAAAACCAGACTCCGTACAACACCGTGAGGTACAGTCGAACGATGAGCTGCAAGCTCCTCACGCGTTTGTACAATCGCAAGCACAAGCGGTGCATTCGCTAACTTCGCGTGTACAGTCGCGATCAGACACGATAAAGCGACAAGACATTCAGATACAGTCTAGTGAAGGAAGACTACAAATCGCGCCCGTACAGTCGCGACCACATGTTAACTCGTACGTACAGTCACGGGTACCGTATCACTTTGATAGGCGACAAGAGCAGGTACAGTCGGGTGCGGAAGTGCTCGCTAGCTGA
- Protein Sequence
- ETRRVLPLTLSQSESGWSYSVSARVYIHHNNRRAIGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAVRAGAAVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKIQPPQGIQPTSHMEFSESRDHQFSPDMISGLDDIHRTYTLADILDVQSHTQESNDDLPTITTSEQSQLIPYVQSRSPDMHKTQHQEASNDELQASHASVVHSQLTSYVQPQSDTIKRQDIQVPLNEGLLQMSPVQSRTLVNSYVQSRKPDSVQHREVQSNDELQAPHAFVQSQAQAVHSLTSRVQSRSDTIKRQDIQIQSSEGRLQIAPVQSRPHVNSYVQSRVPYHFDRRQEQVQSGAEVLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -