Cmes057890.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010002466.1:1-29689[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 42 0.047 9.4 8.8 3.8 2 23 408 429 407 429 0.95 2 42 8 1.6e+03 1.8 1.5 1 23 441 465 441 465 0.86 3 42 0.00017 0.035 16.5 0.3 2 23 472 495 471 495 0.97 4 42 0.093 18 7.9 0.2 1 23 501 523 501 523 0.93 5 42 0.0045 0.9 12.0 2.9 1 23 529 551 529 551 0.98 6 42 0.18 35 7.0 0.1 2 20 562 580 562 582 0.91 7 42 0.076 15 8.2 0.2 1 23 661 683 661 683 0.96 8 42 2.7 5.4e+02 3.3 7.2 1 23 690 712 690 712 0.95 9 42 0.0018 0.37 13.3 1.8 1 23 754 777 754 777 0.95 10 42 0.00036 0.072 15.5 1.3 1 23 784 807 784 807 0.98 11 42 0.052 10 8.7 0.2 2 23 829 851 828 851 0.96 12 42 0.00041 0.08 15.3 1.2 1 23 920 942 920 942 0.96 13 42 0.89 1.8e+02 4.8 0.1 1 12 948 959 948 961 0.90 14 42 9.8 1.9e+03 1.6 0.6 7 23 967 983 967 983 0.92 15 42 0.89 1.8e+02 4.8 0.1 1 12 989 1000 989 1002 0.90 16 42 9.8 1.9e+03 1.6 0.6 7 23 1008 1024 1008 1024 0.92 17 42 0.89 1.8e+02 4.8 0.1 1 12 1030 1041 1030 1043 0.90 18 42 9.8 1.9e+03 1.6 0.6 7 23 1049 1065 1049 1065 0.92 19 42 0.89 1.8e+02 4.8 0.1 1 12 1071 1082 1071 1084 0.90 20 42 9.8 1.9e+03 1.6 0.6 7 23 1090 1106 1090 1106 0.92 21 42 0.89 1.8e+02 4.8 0.1 1 12 1112 1123 1112 1125 0.90 22 42 9.8 1.9e+03 1.6 0.6 7 23 1131 1147 1131 1147 0.92 23 42 0.89 1.8e+02 4.8 0.1 1 12 1153 1164 1153 1166 0.90 24 42 9.8 1.9e+03 1.6 0.6 7 23 1172 1188 1172 1188 0.92 25 42 0.89 1.8e+02 4.8 0.1 1 12 1194 1205 1194 1207 0.90 26 42 9.8 1.9e+03 1.6 0.6 7 23 1213 1229 1213 1229 0.92 27 42 0.89 1.8e+02 4.8 0.1 1 12 1235 1246 1235 1248 0.90 28 42 9.8 1.9e+03 1.6 0.6 7 23 1254 1270 1254 1270 0.92 29 42 0.89 1.8e+02 4.8 0.1 1 12 1276 1287 1276 1289 0.90 30 42 9.8 1.9e+03 1.6 0.6 7 23 1295 1311 1295 1311 0.92 31 42 0.89 1.8e+02 4.8 0.1 1 12 1317 1328 1317 1330 0.90 32 42 9.8 1.9e+03 1.6 0.6 7 23 1336 1352 1336 1352 0.92 33 42 0.89 1.8e+02 4.8 0.1 1 12 1358 1369 1358 1371 0.90 34 42 9.8 1.9e+03 1.6 0.6 7 23 1377 1393 1377 1393 0.92 35 42 0.4 79 5.9 0.3 1 12 1399 1410 1399 1412 0.90 36 42 9.8 1.9e+03 1.6 0.6 7 23 1418 1434 1418 1434 0.92 37 42 0.89 1.8e+02 4.8 0.1 1 12 1440 1451 1440 1453 0.90 38 42 9.8 1.9e+03 1.6 0.6 7 23 1459 1475 1459 1475 0.92 39 42 0.89 1.8e+02 4.8 0.1 1 12 1481 1492 1481 1494 0.90 40 42 9.8 1.9e+03 1.6 0.6 7 23 1500 1516 1500 1516 0.92 41 42 0.00016 0.032 16.6 0.1 1 23 1522 1544 1522 1544 0.97 42 42 0.00051 0.1 15.0 0.7 3 23 1552 1573 1550 1573 0.95
Sequence Information
- Coding Sequence
- ATGGAGGTAAAGCAAGAGGCAGTAGACAGTAGTGAGGATGAGATCTGGATAGTGCAGACCGCGGACATGGAGACCAGCCAGGACTTGGAGAAACTGTTGGTTGTTAACAATAAGGGTACAGATGAAGTGCAGCCATCTAAACAAGAGAAGAGTTTCAAATGCTTTAATTGCAGGAAACAGCTCCCTAGCTTCCTCACTACTGGGGTCACTCATTTGGTTCCTAAGTCGGAGCGTACCACGGACCCATCGCAATATCGACCGATAACGTGCCTACCTACCACCTACAAGGCACTGACATCTGTTCTGGAGGCAAAAATAGCGAGGCATCTAAACAGCTGTTGCATCGTCGCTAATGCCCAGAACGGATGTCGGCGTGGTAGTCGTGGAACCAAGGAACTCCTCCTAATCGACGCGGTAGTTAGCCAGCAGGTCAAACGCAACCGACGTAATTTCTCCGCTGCCTGGATAGACTACAAGAAAGCATTTGACTCGGTCCCCCATACATGGCTAAAGAGGGTCCTCGAcctgtataaaattgatcatacAGTTCGAGACTTCCTCGGTGCCTGTATGGAGCAATGGAGCACAATGCTTAGTCTTTCCGGGGTGCGACTGTCGGATGCGGAAGACCGGATAAAGGTGAGGCGGGGTATCTTTCAGGGTGACTGTCTGAGTCCATTGTGGTTTTGTCTGTCCTTGAATCCTCTAAGCACATTGCTGGGTAAGTCAGGGACGGGCTTTCAGCTTCGGAGAGGGGGCCCGAAGGTGTCTCACTTGTTCTACATGGACGACCTCAAGTTGTTTGCTCCAAACGCTGCAGGTCTGATGCGGTTGCTAGATATCACTTGTGATTTCAGCAGCAGCATCGGCATGGAGCTTGGAGTGGACAAGTGTGCGGTTCTTCATGTGGAGCGGGGGAGAATTATCTCATCGGACCGTATACCAGTGTCTGGTGGGGTGAGCCTTCGTTCACTCTCCGAGGGTGAAACAtaccgTCAAGTATATCCAACTGCTGAGAGTTTATCCTCTCATCGGTGTAAACGGAGAGGCAGGAAGCGGAAAGTTAAGGATGAAAATCTAATATGTATACCAACGGAAGCAGACTTTTTAAAGAGGGCCCAAGGGCGTCCTAGACCCAATACAACAGGAGACAATGATTTACTTGTGATTCGTTCTCGGAAGCGCCGCAACAAGCAGGTGACCTGGAATCCACAAATCGTCACGTGCCACAACTGTAACGAGTCCTTCACATCTAAAGTGCGGCTGAAGTTCCACATGCAGTTCCACGAGAGCACAAACACGATGTTATCAGATGGAAGGTACTTGTGCACGGAATGTACTGGAACCAACTTCTCCACGGAGACCGAACTCTTCGACCACGTGCACTTTCAGCACGACAAGCAGAAGAGGTGGCAGTGTCCTGTAGAGGGGTGCGGAAAGACGTTCTTTTTAAGGGCAACATTAACGAAACACAGTCGTACGCATACAGACACGCGGCGATATGTGTGTGTGACGTGCGGCAAACGGTTCCTGGATAAGCAGACATTGGATGAGCATGGAGTCACCCATCTCCAGATCAAGCCGTTCCAGTGCCACATCTGCCTGAAGCAGCTGACGCGGCGCTCGCGCCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTGGCGCCGCGCCTCGTGCGCGTGTGCGCCGTGTGCAAGCGCGCCTTCCGGGACGCCGCGCACGCGCAGGAACATACAACAAAATCGACGGAATGTATAGAGGCGTTCGCGAATGAGCTGAAGGAAGAGACCGAAGAGATGACGGTGCAGCTGTCGCCCACCAGCGGCCTCGTGCGGCACACCGTGCAGATTATTGAATCACCAAAGCTATCAAAGCCGATCAAACGCCAGGTAACCAACGAAGTGGGGGAACCATTACTGTCTCAGCTAGCTGATGAAGCGCGGGCGTTGATACGAGTCGTGGAGATCGAAAAGGCGTTTAGGTGCGAGTACTGCGAAGATGTGTTCTACTTGGAGTCCGGTTTGAACAACCATCGCGTGATACACAAGGGTGTGAAGAACCCCTTTACTTGTCATATATGTAAGGTCAGCTTCGCTACGTATTCCAGGTGTACAACCCACAAGACGACACACGGCTTTTACAAGCGTTCCCTGGCTGACGCCAAGAAGCAAGCTGATGGGTCGGCCCAAAAGGACACGGGACCAACATCCGCCACCGGTATACTTGGATACGGAGACTTTCCTGTCGTCAAACATTTCTTGTGCGAAGATTGCGGCCGTTCTTACCTTCACTGGACATACCTTCAAGTGCACCGTCGTATGAAACACGCCAACGAGAATTTCTTATATAAGTGCAATCAGTGTGAAATGACTTTCCCTAATAGTTGGAGTTTGTCGTACCATCGCAAGAAAGTGCACGGCAAAACAGGGCCCGATGACCCTGGGACAAGTAATAAGACTGCCAGGGAAGATTACAgGATACCGTGTCGAGATTGCGAAGAAATTCTCCCAAACAAGACAGCTTTGTATAAGCACAGGAAGAAAGAACATAGTGACAGTAATTTGTCTGCCACGCGGACGAATAACGCTCAGGGTAAGAAATTTGATTTAGTTCTAGCCGATAATGCTCAATTTATGTTGAAGGTTGTCTCGCAAATAATAGAAGTACACAAGGTGGAGGCGGAACTGTCGTGCGGCTCTTGTAGCAAGTCGTTCGGCGCGGCTGGTGCACACTCCGCCTGCGCGCGCCGCCCGCACGCCTGCCCCGTGTGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCTCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGGTACGCACCAGTAGCCCCGCGCGGACACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGGGTCGCCTTCCGCAGATCGACTGCGATGCGCAACCATCGCCTCATCCACAGTGGAGTGAGAGCCTGGGCCTGTGGGCGATGTCCGAAACGGTTCAGGATTCGTTCCGATCTGCGCACGCACTTGCGGCTTAAGCACCCCGCTACTTTACTCGTGTTTGAGATGGAAGGTCTTAATCCGTCACCGGATGAAGTTATGAAACACCTAGCGATGCACAATATTTCTCACGACAAGGTTATCGAAATCACCAAGATGTCATTCGCAAAG
- Protein Sequence
- MEVKQEAVDSSEDEIWIVQTADMETSQDLEKLLVVNNKGTDEVQPSKQEKSFKCFNCRKQLPSFLTTGVTHLVPKSERTTDPSQYRPITCLPTTYKALTSVLEAKIARHLNSCCIVANAQNGCRRGSRGTKELLLIDAVVSQQVKRNRRNFSAAWIDYKKAFDSVPHTWLKRVLDLYKIDHTVRDFLGACMEQWSTMLSLSGVRLSDAEDRIKVRRGIFQGDCLSPLWFCLSLNPLSTLLGKSGTGFQLRRGGPKVSHLFYMDDLKLFAPNAAGLMRLLDITCDFSSSIGMELGVDKCAVLHVERGRIISSDRIPVSGGVSLRSLSEGETYRQVYPTAESLSSHRCKRRGRKRKVKDENLICIPTEADFLKRAQGRPRPNTTGDNDLLVIRSRKRRNKQVTWNPQIVTCHNCNESFTSKVRLKFHMQFHESTNTMLSDGRYLCTECTGTNFSTETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCKRAFRDAAHAQEHTTKSTECIEAFANELKEETEEMTVQLSPTSGLVRHTVQIIESPKLSKPIKRQVTNEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNNHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGSAQKDTGPTSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCEMTFPNSWSLSYHRKKVHGKTGPDDPGTSNKTAREDYRIPCRDCEEILPNKTALYKHRKKEHSDSNLSATRTNNAQGKKFDLVLADNAQFMLKVVSQIIEVHKVEAELSCGSCSKSFGAAGAHSACARRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVSFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRYAPVAPRGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHSGVRAWACGRCPKRFRIRSDLRTHLRLKHPATLLVFEMEGLNPSPDEVMKHLAMHNISHDKVIEITKMSFAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -