Cmes034981.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010001181.1:467914-469953[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 22 7.7 0.9 3 21 347 365 346 368 0.88 2 10 1.4 2.7e+02 4.2 4.0 2 23 377 397 376 397 0.92 3 10 0.0058 1.2 11.7 0.7 2 23 413 433 412 433 0.96 4 10 0.0065 1.3 11.5 2.8 2 23 445 466 444 466 0.94 5 10 0.98 1.9e+02 4.7 0.2 2 20 491 508 490 511 0.68 6 10 6.8e-07 0.00014 24.1 2.2 1 23 518 540 518 540 0.98 7 10 0.12 23 7.6 1.1 1 23 546 568 546 568 0.98 8 10 8.4e-05 0.017 17.5 3.8 1 23 574 596 574 596 0.95 9 10 0.00076 0.15 14.5 3.2 1 23 602 625 602 625 0.98 10 10 0.00026 0.052 16.0 0.7 3 23 633 654 631 654 0.95
Sequence Information
- Coding Sequence
- ATGAAAACCCGTAATTGGAGCCGACCAGAAAAATCAATAGTCACTGAAAAAATTGCAGGACGATCTTTACCACTTGAAACATGTAGAATATGTTTGAAACGAGGGAAAGTTCCTATTTTCGGGCAAGATGATAAATCAAAAGATGTGATGGAATTTGGAGGCATAGAAATCAGCTATGGTGATGAACACCCACAACATATATGCCATACTTGCCTCTCGCTGTTGGAAGCTGCAATGGTATTTCGAAAAACAGCCAAGACATCTgatgaaatacttaaaaatgGTGATTTTAAAGAAGATTCCTCAGAATTTTCTGATGATGAAGATTATATTCAGGATAATTGTAATGATACAGATAATGAATACACTATTAAAAGAGAATATCTTGAATATAAGGATTCTTCAGGCTCAGATAATGAGCCAATTTTGAAATGTGAACCGGAATCTGAAGGAGATCCATACACAAGTACTGAAACTCAAAAGAcaattggtaaaataaaaaaaaagttaatagaGCCGAAGGACTCGTTATCTAATGAATCCTTTATGGAAGAAGAATATCTAGAATATAAAGATTCTTCAGAGTCAGACCACGACCTCGACCATAACATATATGAGCGGGAGTCAGATATGAAGTCAATAAATATTGCTGCCACACAAGGAACTACTGGTACAAACGACATAGAAATGGAGTTAGTAAAAGGGGATGGAAATGAAGGAGATCGGTACATAATTACTGAGACACAAACAACTATTGGTAAAGTAAAAGAAAAGTCCATAGAGCCTAAGGATTTGTTATCAAATGAATCCTTTATGGAAGAAGAATATCTTGAATATAAAGATTCCTCAGAGTCAGACCATGACTTCGATCAGAACATATATGAACCTAAGTCGATAGTCGATAGTAAGTCTATGAATGTTACTGATACACAAGGGGATAATGGTATAAAAGATATTGAAATAGAGTCAGTGAAAGAAGATGAGAATGCTGATATTGATAATGAAATGGTAATGATAATTGTGTCTGAACCAAAAAATTGTGCAAAATGTAACACTACTTTTGAAAATggtcaagagcttgaaaaacaTAATACAGAAAAACATCCAATTATACCACCTAATCACAAGCAATGTGACATCTGTCATAAGTCAATACACAAAAAAAGTTACAATTTACATATAGGGCAACACCGAGAAAAATATAAAGAGAAGCATGATAAAAAGTATGGTAAATTAGAATGTGAGGTTTGTGGAAAACAAGTTAACAAGTCGTATTATAAAACCCATTTGAAACTCCATGGCACGGCAGAAGAACAAGCAGAAAGATTTGTAGAATGTACAATTTGTAAAAAAACCTTCAGCACACATTACTTTAGTGACCATATGAAACGGGTCCATGATAAAATGACATTTAAAACCAAACGACGGACatcaagaaaaacaaatgagaaACAatccaaaatattaataaaatgtccGATTTGTGACAAAAATGTTAACGAAGATATATATAAAGAGCATTTAGCGAAGCATGGTGGCCCAACACGCCAGTATATATGTGATAAATGTGGGAAAGTATTTAAACATCCATCAGCCTTTAAAACCCACACTCTAACCCATGGCAGTGAACTGAAATACCAATGCCAATTTTGTCCTTACCGTGGTTTACACTTAGGACTCCTTAAAGTTCATGTGAGAACTCACACTGGTGATTATAACTACAAATGTTCAGAATGCCCTGCAAAATTCATTACTAAGAGTAATTTAACTAAACACTGTCAAAGGCATAAAGGACTATGTAAATTTAAGTGTGAAACATGCCATAAAGGTTTTTATAGTAAACGGGATGTTGATAAACATGTTAAAACTGTTCACTTAGGGTTGAAGAATACTATTTGTGATATGTGCGGTAAAGGATTTGGTCATAGAGACAATATGTTAAGCCATCAGCTTAAAGTGCATAAAAGAGAAAGAATCACAGATAAAAGAGGGCGAATGGCATCATATTTAAAAGAGGAACATAAGAAAATTTTTATctaa
- Protein Sequence
- MKTRNWSRPEKSIVTEKIAGRSLPLETCRICLKRGKVPIFGQDDKSKDVMEFGGIEISYGDEHPQHICHTCLSLLEAAMVFRKTAKTSDEILKNGDFKEDSSEFSDDEDYIQDNCNDTDNEYTIKREYLEYKDSSGSDNEPILKCEPESEGDPYTSTETQKTIGKIKKKLIEPKDSLSNESFMEEEYLEYKDSSESDHDLDHNIYERESDMKSINIAATQGTTGTNDIEMELVKGDGNEGDRYIITETQTTIGKVKEKSIEPKDLLSNESFMEEEYLEYKDSSESDHDFDQNIYEPKSIVDSKSMNVTDTQGDNGIKDIEIESVKEDENADIDNEMVMIIVSEPKNCAKCNTTFENGQELEKHNTEKHPIIPPNHKQCDICHKSIHKKSYNLHIGQHREKYKEKHDKKYGKLECEVCGKQVNKSYYKTHLKLHGTAEEQAERFVECTICKKTFSTHYFSDHMKRVHDKMTFKTKRRTSRKTNEKQSKILIKCPICDKNVNEDIYKEHLAKHGGPTRQYICDKCGKVFKHPSAFKTHTLTHGSELKYQCQFCPYRGLHLGLLKVHVRTHTGDYNYKCSECPAKFITKSNLTKHCQRHKGLCKFKCETCHKGFYSKRDVDKHVKTVHLGLKNTICDMCGKGFGHRDNMLSHQLKVHKRERITDKRGRMASYLKEEHKKIFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -