Cmes042615.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010001530.1:23034-45472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.1 8e+02 2.8 5.0 1 23 276 301 276 301 0.93 2 15 0.0013 0.26 13.7 0.5 3 23 320 341 319 341 0.95 3 15 0.019 3.7 10.1 2.9 2 21 377 396 376 397 0.93 4 15 1.3 2.5e+02 4.3 1.0 1 14 401 414 401 423 0.81 5 15 9.6 1.9e+03 1.6 1.7 1 23 650 671 650 671 0.87 6 15 1.7 3.4e+02 3.9 0.7 1 23 682 704 682 704 0.92 7 15 0.0013 0.25 13.8 0.0 2 23 710 731 709 731 0.96 8 15 0.092 18 7.9 0.7 1 23 753 774 753 774 0.96 9 15 0.0084 1.7 11.2 1.8 3 23 820 840 820 840 0.95 10 15 0.00032 0.063 15.7 6.6 2 23 856 877 855 877 0.97 11 15 9.3e-07 0.00018 23.6 2.5 1 23 883 905 883 905 0.98 12 15 0.00094 0.19 14.2 0.7 1 23 910 932 910 932 0.96 13 15 0.054 11 8.7 2.0 2 23 939 961 938 961 0.95 14 15 1.6 3.1e+02 4.0 0.4 1 19 968 986 968 987 0.87 15 15 0.00036 0.072 15.5 1.1 3 23 1000 1021 999 1021 0.96
Sequence Information
- Coding Sequence
- atggcagactctaaccgcCGGAAACCAGGTACTTCGAGGAGAAAGAAAAGTGAGAATAATGTCCCCAAAACACCACAAACATCGAGTCAAACAAATTATGACTTTGAAGCCCTCATTGATTCTCAGAAGTCCGCAGCAGAAAGTCAATCACCTCTAAAATTCTCTATCACTGTAGCAGTAGAAGAATGTGATGAGAGTAGTTCAGAGTTAGTGATAGTAGAACCAGAAGACAATACTATACAGATTCTATCTGACTCAGAAGCCGATGATTATTATGCTGTCAGTACCAAAAGTCTGGTGAGTAAAAACGAAACAGGTGCAGGTACAAACGATTCAACTAACAAGGTACTAGAAGCATTATTTCTAGATCGAGAAGAAATACTCAACGCAACTAACAAAATTCTAGAAGAGTCAACGAATATCGCAGATAAAGTCCTTGGGATAGAAGTCAGAAATTGCATCGGACAGTTTCAACTAAAACAGAATGAGTATCAGGATACCAAACTTTATAAAGTGATGGAGCAGTGGCAAGGGTGGCAAAAATTAATAgtacaaattaaattaagaaGTTCACCGTTGTTCTACAAATGCTACATTTGTGAACTATCTTGGTGGTACCTTTACGATTTTCAAGAACATTTGAAATGTCACAAAGAATATAACTTAGATCTTGAAGAGTATACCATCTATGAAGCCAACGTTATAGCATATTTAAATGTTGATGAAATTGTagatataaaacatttttatacagAAGGAGATTGTCCGAAATGTGGGAACGAGTTTGCTATACATAAATCGAGTAATCGAGCAAAGAATTCCCTATATAGTTGTAAAGTCAAAACATGTTATAAGTTATTTAACACGTGTTTTGCTCTAAGAAGTCACGAATACAGGTATCATACAATATCTGAATTAACCGGTGTAGCGTTCCAACTAGGAAAACTGAGCAAGAATTGTGAGGTCTGCGGTGTTGTTTTTCACTCGCAGGAATCGTACCAGATGCATATGAACTTGATGCACAGTGTACGGTCAGATTGTATAGTTCCTGCAAAGTATCCGAAGTGTACTCAGTGCCAAGCTGTCTATGGATGGCATCATAATTGCAAATTAATAACCACATCATGGCAGTGCAGCTTTTGCTATAGGAGTTTCCGACAGCATCAGTTATATCGGAATCATATGTATAAAATTGGTAGATATCAGTGCAAAATATGCAATATAATGTTAACGAGGCAATGTCTTGAGGTTGATCATTTTCTAAAGCATTCAGACAAGTTTATGATTGTGAAGAAATGTGGAGTGTGCGAAGATTTTAATGTGTTTCTGGACGATGCTGGGGCGCTCAATCATGTTTCCGTTCATTACCATCTACGCAAAGACGAAGATTTCACTAAATATTGTAGCAATATATTAGTTCCAAAATCATGTTTGACTCAAAAATCAGAGCGCAAGCAAAGCGTGGACGTTGAAGAAAAACCGAAAGAAGCAATACTTGTCCcacaaattgaaattaaacaagaaGTATTGGAAACTTTTGAAAATCAGAGTGACGAAGAAGCAATTGATAACCAAATTCAAATCAAAGAGGAAATAGATATAGAGGACAATTTCGATTCAGAATACTTAAAGAAAGAATATTCAAGAAAACTAGAAGAGGACGCCGAGATGCATGCAAGAATATTCGGTGTAAAAATCGAAGCAAGTGATATTGAAGTGAAGCACGAAATTGAGGAAGAAGAATATGAAGacgatataataaaattagattATAATTTTCTGGAAAACATGCAACAATCTATGGATAATGCTTCAGATGGATTCATAGAAGGTACTGAAATTGAAATGCAAACAGACGAAAACTCGCAAGAAATGGACGACGATAGCGACGAAGGTGTAGAAGGAAGTACAAAAGAGAGAGGGAAAAGGGACAGACTGCCTAAAATATATAGATGCAGTAGATGTGGGTTCGATGCTGTACACAGAGAATATAGAGCTCATTTGAAATCTCATTGTAAAGAAAGATTATACGAAAGAGACAACTATCCATGTACGAAGTGTGCGGTGAATTTTGAAACGTTTGAGAAATTCATTGACCATTTTACTGAACATAACCTCAATTCTATGTCATGCCCAGAATGTTATAAAGCATATGAGACATATGAAGCATTGCAAGTACATCTCGCATCACATATAAGAATGACTTATGTTACCGTTCAAACCATACCGGCCTCACAGGATTCACAGTTGTACCATTATCGGTGTAAACTTTGTGAGAAGACCATTGACAAGAAAGACTTTTTTGCGCACTGGGAAGTTCATTTATCGTTTATAGAAAACACTGATAAGGTGATTGAGAAGGAAGATGAAAAAGCAGGGCCTATAGACCAAGAAATGGTAGAACAGTTGTTggAACGTCTCCAATCTCCGGAGCCATTATTCAAAATGAGAAGAGGCTGTCCCATCTGTCTTAGACATTTCGATCGGAAGAACGACTATAAGCGCCATCTAGTCGAGCATCTCCTGAACAACGCATACACCCAGCGCCCCATATACGCAGGACTGAAATGTCAGATTTGTACCAAATGCTTTCAAAAACCTGAACATTATAAGAAACATATGAGGGATCACGGTTCTTTAAGGGATTATCGATGCGAGATTTGTGATAAGAATTTCAGTGATTCAAGCAATTATACTAAACACAAAAAGCTTCATAACGCTAATGCGTTTACATGCGATATTTGTCGAAAGAGGTTTCAAATTAAGATATCGCTCGAAAAACATATGGTGcTTCACGAAAACCAAAAACCTATTGAATGCTTATCGTGCAACAAGATTTTCCATCTAGAGTCAACATACAAAAAACATGTACGCATGTACCACGAAAAGGATAGGCTGAAATTCGCTTGCATGGTGTGCAGAAAGAGGTTCTATTCTTTAAAAGATAAATGGGATCATCTATGGCAAGTCCACAACGAAAGGAAGCATAAGGCCGACTGTCCGAAGTGCGAAAGCTCTTTTAGAAGATTTcgagatttaaaaaatcatatgaAAGAGGTACACAATATGGATATACCAAATATGAGTTCTAAAAAGAAGACCAACATAAAAGATGTTGTAAGACAAAAAATGTCTATGGTGAAACTACCCGCGAAGATTCCGAAAAAGGAAACGTTAGTTGTCTATGTATAA
- Protein Sequence
- MADSNRRKPGTSRRKKSENNVPKTPQTSSQTNYDFEALIDSQKSAAESQSPLKFSITVAVEECDESSSELVIVEPEDNTIQILSDSEADDYYAVSTKSLVSKNETGAGTNDSTNKVLEALFLDREEILNATNKILEESTNIADKVLGIEVRNCIGQFQLKQNEYQDTKLYKVMEQWQGWQKLIVQIKLRSSPLFYKCYICELSWWYLYDFQEHLKCHKEYNLDLEEYTIYEANVIAYLNVDEIVDIKHFYTEGDCPKCGNEFAIHKSSNRAKNSLYSCKVKTCYKLFNTCFALRSHEYRYHTISELTGVAFQLGKLSKNCEVCGVVFHSQESYQMHMNLMHSVRSDCIVPAKYPKCTQCQAVYGWHHNCKLITTSWQCSFCYRSFRQHQLYRNHMYKIGRYQCKICNIMLTRQCLEVDHFLKHSDKFMIVKKCGVCEDFNVFLDDAGALNHVSVHYHLRKDEDFTKYCSNILVPKSCLTQKSERKQSVDVEEKPKEAILVPQIEIKQEVLETFENQSDEEAIDNQIQIKEEIDIEDNFDSEYLKKEYSRKLEEDAEMHARIFGVKIEASDIEVKHEIEEEEYEDDIIKLDYNFLENMQQSMDNASDGFIEGTEIEMQTDENSQEMDDDSDEGVEGSTKERGKRDRLPKIYRCSRCGFDAVHREYRAHLKSHCKERLYERDNYPCTKCAVNFETFEKFIDHFTEHNLNSMSCPECYKAYETYEALQVHLASHIRMTYVTVQTIPASQDSQLYHYRCKLCEKTIDKKDFFAHWEVHLSFIENTDKVIEKEDEKAGPIDQEMVEQLLERLQSPEPLFKMRRGCPICLRHFDRKNDYKRHLVEHLLNNAYTQRPIYAGLKCQICTKCFQKPEHYKKHMRDHGSLRDYRCEICDKNFSDSSNYTKHKKLHNANAFTCDICRKRFQIKISLEKHMVLHENQKPIECLSCNKIFHLESTYKKHVRMYHEKDRLKFACMVCRKRFYSLKDKWDHLWQVHNERKHKADCPKCESSFRRFRDLKNHMKEVHNMDIPNMSSKKKTNIKDVVRQKMSMVKLPAKIPKKETLVVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -