Basic Information

Insect: Cybosia mesomella
Gene Symbol: RREB1
Assembly: GCA_946251875.1
Location: CAMIUH010000468.1:318857-324345[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.09 18 8.0 0.4 1 23 81 104 81 104 0.94

2 11 0.022 4.4 9.9 0.1 1 23 296 318 296 318 0.97

3 11 0.0012 0.24 13.9 0.4 1 23 327 349 327 349 0.99

4 11 0.00075 0.15 14.5 2.0 1 23 355 378 355 378 0.97

5 11 0.003 0.6 12.6 1.6 1 23 726 749 726 749 0.96

6 11 0.00025 0.05 16.0 1.3 2 23 944 965 943 965 0.97

7 11 0.11 22 7.7 6.5 1 23 971 994 971 994 0.97

8 11 0.065 13 8.4 1.2 1 23 1027 1051 1027 1051 0.92

9 11 0.0057 1.1 11.7 0.4 1 23 1075 1098 1075 1098 0.97

10 11 0.023 4.6 9.8 0.3 2 23 1138 1159 1137 1159 0.92

11 11 0.029 5.7 9.5 5.3 1 23 1165 1187 1165 1187 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.09	18	8.0	0.4	1	23	81	104	81	104	0.94
2	11	0.022	4.4	9.9	0.1	1	23	296	318	296	318	0.97
3	11	0.0012	0.24	13.9	0.4	1	23	327	349	327	349	0.99
4	11	0.00075	0.15	14.5	2.0	1	23	355	378	355	378	0.97
5	11	0.003	0.6	12.6	1.6	1	23	726	749	726	749	0.96
6	11	0.00025	0.05	16.0	1.3	2	23	944	965	943	965	0.97
7	11	0.11	22	7.7	6.5	1	23	971	994	971	994	0.97
8	11	0.065	13	8.4	1.2	1	23	1027	1051	1027	1051	0.92
9	11	0.0057	1.1	11.7	0.4	1	23	1075	1098	1075	1098	0.97
10	11	0.023	4.6	9.8	0.3	2	23	1138	1159	1137	1159	0.92
11	11	0.029	5.7	9.5	5.3	1	23	1165	1187	1165	1187	0.97

Sequence Information

Coding Sequence: ATGTACTCTTTTGTTACAGAAATCAAAACAGAGGAGGTCATCAGTCAGGCTAAAATCGAGGCCGAAGTAGAAATGGACGGGGTAAAAATTGAAAGGCAGGAGTTTAGAACCACTAGGACTATGAGCATTGACAGTGACAACAGGTCCGATAGGAGTGAGGAAGAAGACACTAGAAGAGCTCGCAAGAGGGCAGCGTCGTCATCCCCATCGCCAATGCCCATGGATAAAAGGATTGCCCGATTTGAGTGTCCCAAATGCAGACAGAGGTTCGACTCGGTTAACGCCTACGACATTCACCGGTATACAGCACACAGTGACGATACCAAGGCCGGTTTTGACGACCTAACCTTCGTTGATTTTTCCAGCAAAAAGTTTGCAGAAATTGCTCGCGGTGTTTGTGATAGAAAACCTCACGTATCAATAACGGATCAACGTTATAGATGCGATATCTGCGTTAGGGATTTCCCTTGCGGACAAGCTCTGGACATTCATAGAAAATCCTGCGCACATAACACTCGAATCCCTAGCCCAGAAAGAGATCATAGGGAGGATTTCTTTGCAAAGCTAGATTTAAGAAACCGGTCGTTCGGAATCTCTGGCACATTAACACCACCGATGGAGAGATTCCCTCCCAAATACGATGATGGCCACCTAACCACAAACGGAATTAGGCACATCGACGCTGCCCGCGACTTGGCCGATATCCAGTCAATATTAAATGTAACGTCCGCCGGTGGCCTTTTAGAAAGGCTTACTGGCTCAAGAGTGGCGGCTTTAGAAAGCGCAGCGCTTACTCCTCCCGATACTATAATAAAGGAGAGAGACCAAGAGGAAACGCAAGATAATTTCGCTGCTGAATTCAGGCGCATGAAGTTGCGTGGAGAATTCCCTTGCAGATTGTGCCCGGCCAAATTTCCTAACCTTAGGGCTTTAAAAGGACATAACAGAGTGCACTTGAGTGGAACGGGTCCGGGACCGTATCAATGCAATATGTGTCCACATGCTTCTTTAGATAAGGCTGCTTTAGTGCGTCATATGCGCACGCATAACGGTGACCGTCCTTATGAATGCGCCGTGTGTAATTATGCTTTCACAACCAAAGCTAATTGCGAGCGTCACTTAAGAAACAGACACGCTAAAGTGACACGGGAAGATGTCAAAAGATCTATTATTTACCatccgtctgaagacccaaatAACGATGAAGTTAACTCTAAACTTGCACGAGATGAGGTAAAAAGATCACTAGCTTTTCACACACCTGATGTAGAAAGGCGAAATGAAAGTACTGGTCGTGATACACCACTCACCCACTTCACACCAAGCTTCATAACAGACCGACATCCAGTCACTAATTTGACCTCAAAAACTTTACCTGAACCGCCTATGATCCCAAGAGAACCAGAACAACCTGTACCTCGTATTAAAGTAAAGGGCATTGGCCAGTTGACTCAAATACCTGAATTTAGACCTCCAGAATTGTCTTATAAAGTCAATCAACAACAAGTCCAACCAGAGCCGTATGATGAAGAAGTACCAGTAGATTTAAGTACAAGTGATAATAACAGCTGCGATGTCCTTGACCTTAGCAAAAAGAAACGCGATAACGATGATGAACCTAAAGCCCCACAACGCCCGTCTTTCGAACCTGACCCAGCAAGCGTTGCCGCATCAGCGTTTGAAAAGACGAGATTTTTATTAGCTCAACAAAGACTTTTTGAGTCATCCCTTCCAAAAATTGATCCGGCCTATTACGCCTCTCAGCTATCACAACTTTATGCTGGTGCTGTTCCTGGAATACCTGGTCTACCCTTACCACCGTCCTTTCCTATTGCCCCATATTTGCTCCAACCCTCGTTTTTTCCTCACCCAACAGACTCTCAAGAGCTTGCTGAAATTAAACAGCGTATACAGAAAGAGATCATACGGGGACTAAGTATGTCTGGTGGCAGACTTGTTCCTAACGAACAGGAAAGTCAACCTAAATTAGAACCTGAGGAAGAAGAACAAAAACCGCCGCAAGTTCTTTCCCCTGTACCGTCACCTCATTCGGAGTCGCCACGGCCCCAAATGAATAACTCAATTGTGTCTCAATCTGATTCTGTCAAAATGGTTATAAAAAACGGTATTCTCATGCCAAAACAGAAACAGAGGCGGTACCGAACCGAAAGACCTTTCTCCTGCTCCCAGTGTTCGGCACGATTCACTCTTAGATCGAATATGGAACGGCATGTGAAACAACAACATCCTCAACACTGGAGCGTTCGGAGACCGTCGCCAAGAGCTCCACCACCGTACCCTACTCCTGATTCAATAGCTGACCGCATGAAGTTTGCGTTGTTAGCTCGCCATCTAGAAAGACCTTTGCAGCAATCTGAGCGATCACCCGTGCGACGAGACTCTGACGAAGTAGCGGATAATGAGGAAGATGAAGAGGATACCTTAGTAATAGATGAAGAGCCGGACCAGGATGTCAAAACGGAAGATCATACTGCGGCTCGTCGCGCTGCTGCCGAAATACTAATGGCTACATGCCAACAAGAAATGAACAAAGACTTTGACCTAAAAATTGCGGGCAATCTCATTAATAAACCGGTACACGTTAACAATGACAAAACAGACTCTGGAACTAACCTTACACTGGGAAACCAAGAAATTTCACCAGTACCGGTTGTACCAACTCGCAGTGACgaggaagaagatgaagaaggaTTGGTTGCCTCCACCAGTGAAGGGAATAACTCGGGCAGCGatgaaaataaATCAGAAACGGATACAGCACAGCCACCAAAGAAAAGGTCAGCATACAGCCTTGCACCAAACCGCGTGTCTTGTCCATATTGCCACCGAAAGTTCCCATGGTCCTCATCATTACGTCGCCACGTCCTGACTCATACTGGACAGAAACCATTTAAGTGCCCGCACTGTACATTGCTGTTTACCACTAAATCTAACTGTGACCGCCATCTATTAAGAAAACATGGAGGATCAGCCCGCGCAATCTTAGCAGAGCCTATTTCTGAAGCTGTATCGCCACCACAGCCCATCAACGATAACCGAGCAGTTCCTGAAAGGCCATACAAATGCGCATCTTGTCCCACCAGTACTTTTTCTTCTCTAGAAACATTGAAGAAGCATATGTCTTCAAGACACGGGAGTGATTCTCAACCAGGATCACCAACTCCAGAAGCTATCGAAGAATCTATAGAAGGTGGTCTAGTCTTCAAGTGTCATCTGTGTGAAGCATCTTTCAGTGACAGAAATGGGGCTCTGAATCACTTGGCGACAGGCCATGCTGCTGAATATGAGCTGCTACTCAGCAAAGGAGCTTTAGATGCTAATAGTGACAAGAGTGAAAGCGCTGACGATGATGAGAGAGGGAAGTTTCCAGACCATGCTAATAGAAAGgttGTATGCGCATTCTGCATTCGTCGCTTTTGGTCGGCCGAAGATCTTCGCCGTCATATGCGTACCCACTCTGGAGAGAGACCGTTTGCTTGCGACCTGTGCAGACGTCGCTTCACACTGAAGCACAGCATGCTACGTCATCGGAAGAAGCACCGTGAAGAGATAACTGATGATGAAGAAGCCTCACCACCGACTACGCCGATGGAAGAGAACATTACAAATGGGTATCGCTACCAAGAGGATGATGGTTCAGGCAACGAGATCCCAAGCAACGTGAACAACAACAATTCTCCTCCATCAGCCCCATACGACAAAAAGCTCAAACTGGACATGACGTCGCGCAAATACTCTTCAGAGGCAGACAATGACCCCGAAAACAGCGATCTCATTGGCAAACTACTCGGTATCCCTGATAAAACCATCAACAAGTTACTCTCCTCCGCAGACGAGGCAGCTAAAATCCTCGGAGTGAACAAATGA
Protein Sequence: MYSFVTEIKTEEVISQAKIEAEVEMDGVKIERQEFRTTRTMSIDSDNRSDRSEEEDTRRARKRAASSSPSPMPMDKRIARFECPKCRQRFDSVNAYDIHRYTAHSDDTKAGFDDLTFVDFSSKKFAEIARGVCDRKPHVSITDQRYRCDICVRDFPCGQALDIHRKSCAHNTRIPSPERDHREDFFAKLDLRNRSFGISGTLTPPMERFPPKYDDGHLTTNGIRHIDAARDLADIQSILNVTSAGGLLERLTGSRVAALESAALTPPDTIIKERDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDVERRNESTGRDTPLTHFTPSFITDRHPVTNLTSKTLPEPPMIPREPEQPVPRIKVKGIGQLTQIPEFRPPELSYKVNQQQVQPEPYDEEVPVDLSTSDNNSCDVLDLSKKKRDNDDEPKAPQRPSFEPDPASVAASAFEKTRFLLAQQRLFESSLPKIDPAYYASQLSQLYAGAVPGIPGLPLPPSFPIAPYLLQPSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVPNEQESQPKLEPEEEEQKPPQVLSPVPSPHSESPRPQMNNSIVSQSDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPTPDSIADRMKFALLARHLERPLQQSERSPVRRDSDEVADNEEDEEDTLVIDEEPDQDVKTEDHTAARRAAAEILMATCQQEMNKDFDLKIAGNLINKPVHVNNDKTDSGTNLTLGNQEISPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTAQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAILAEPISEAVSPPQPINDNRAVPERPYKCASCPTSTFSSLETLKKHMSSRHGSDSQPGSPTPEAIEESIEGGLVFKCHLCEASFSDRNGALNHLATGHAAEYELLLSKGALDANSDKSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEASPPTTPMEENITNGYRYQEDDGSGNEIPSNVNNNNSPPSAPYDKKLKLDMTSRKYSSEADNDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00795186;
80% Identity: -