Cmes030383.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000970.1:166820-168076[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.94 1.9e+02 4.8 3.0 1 23 100 123 100 124 0.93 2 10 0.0022 0.43 13.0 2.3 2 23 150 172 149 173 0.95 3 10 0.063 12 8.4 2.8 2 23 195 216 194 216 0.96 4 10 0.029 5.7 9.5 0.9 1 23 220 242 220 242 0.96 5 10 0.00015 0.029 16.7 1.3 1 23 247 270 247 270 0.97 6 10 0.04 7.9 9.1 0.4 2 23 277 299 277 299 0.91 7 10 0.00019 0.038 16.4 0.9 2 23 307 329 307 329 0.96 8 10 6.6e-05 0.013 17.8 3.4 1 23 335 357 335 357 0.97 9 10 1.9e-06 0.00038 22.7 3.4 1 23 363 385 363 385 0.99 10 10 0.00023 0.045 16.1 5.4 1 23 391 414 391 414 0.98
Sequence Information
- Coding Sequence
- ATGAATACTTACACACCTGTACCCAAAAATGTTGAGGTATATAAGCATCGTAGTAAGAAACCTAAATCCAGAAATGATAAGCTAGACAAACATCGGACTAATGAACCTGAACCAAGAAATGTTGAGCTATATAAGCATCGGACTAATGAACCCGAACCAAGAAATGATGAGCTATATAAGCATCGGACTAATGAACCTGAACCAAGAAATGATGAGCTATATAAGCATCGGACTAATATAAAAGAGGTTATTCTTTGGTCTAACGCTACACCTATTAGACGTTACGGAGGTATAGGCTACATGTGCTGCTACTGCGAAGACCAGTACCCAGAGCCTACAGATCTCAAAAAACACACATTAGAAAAACATCATGATGTCAAAAAAGCATGTTTtatgaaaaaagtaagcatgaATCAGTTTGTAATTCGTTTAGATATTACGTCATTACATTGCAAGATTTGTGATATCAATCTCGACACCTTGGAGCAACTTATGAAACATTTAAAGACTGATCATCATAAAACCATCTACACTGACATAAAGAACCAAATCATCCCGTTCAAATTTGGTACGGAATTCCTTCAATGTTGTATCTGCTTGAACACCTTTACTAAATTTAAGATGCTGCTCGAGCACATGAACTTACATTATAGAAACTATATTTGTGAAATTTGTGACATAGGCTTTGTTAATTTCCAGGGTCTTAAGTGTCACAGGCTTAGACATGAAACAGGCACGTTCATATGTGATCATTGTGGTCAAGTTTTCGATACCAATGTTAAAAGAAAAGCCCATGAAAGAACGATGCATATTTCGAAAACTGCACCCAAATGCGGGTATTGCAATGAAACCTTCAGTGAATACAGAAAGAAAGAAGCACATTTAGTATCAGTGCACGGTTTAAAATTGCCTACCCCTCAATGTCAAGCGTGTGATAGAGTTTTTAAAGACAGAAAACTACTGAGGCTACACGTCAAGCGAGATCACTTGTTGGATAGACCACATAAATGCTCAGAATGCGACATGAGCTTCTTCCAATCTACAGAATTAAAATATCATATGGTGAAGCATACTGGACTAAGATCTTTCAAATGCACTGTTTGTTCGAAGGCGTTTTGTAGGGCGAAGACTTTGAGAGATCATATGAAAATACACAATGACGTCAGGCGATTCAAATGTGAACACTGTGGACAGGCTTTTATACAAAAGTGTAGTTGGAGATATCATTTGAGGTCTAAACATGGAGACATTATGtga
- Protein Sequence
- MNTYTPVPKNVEVYKHRSKKPKSRNDKLDKHRTNEPEPRNVELYKHRTNEPEPRNDELYKHRTNEPEPRNDELYKHRTNIKEVILWSNATPIRRYGGIGYMCCYCEDQYPEPTDLKKHTLEKHHDVKKACFMKKVSMNQFVIRLDITSLHCKICDINLDTLEQLMKHLKTDHHKTIYTDIKNQIIPFKFGTEFLQCCICLNTFTKFKMLLEHMNLHYRNYICEICDIGFVNFQGLKCHRLRHETGTFICDHCGQVFDTNVKRKAHERTMHISKTAPKCGYCNETFSEYRKKEAHLVSVHGLKLPTPQCQACDRVFKDRKLLRLHVKRDHLLDRPHKCSECDMSFFQSTELKYHMVKHTGLRSFKCTVCSKAFCRAKTLRDHMKIHNDVRRFKCEHCGQAFIQKCSWRYHLRSKHGDIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -