Basic Information

Insect: Cybosia mesomella
Gene Symbol: -
Assembly: GCA_946251875.1
Location: CAMIUH010001150.1:162185-181016[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.43 85 5.8 3.5 1 23 396 418 396 418 0.97

2 9 5.9e-06 0.0012 21.1 0.3 2 23 467 489 466 489 0.95

3 9 0.0027 0.53 12.8 0.7 2 23 495 516 495 516 0.97

4 9 8.8e-05 0.017 17.4 4.1 1 23 524 546 524 546 0.97

5 9 3.5e-06 0.0007 21.8 1.4 1 23 551 573 551 573 0.96

6 9 0.00014 0.028 16.8 1.4 1 23 582 604 582 604 0.99

7 9 1.7e-05 0.0034 19.7 0.7 1 23 610 633 610 633 0.94

8 9 0.031 6.2 9.4 0.4 1 12 639 650 639 662 0.87

9 9 2.6 5.1e+02 3.4 4.2 1 23 670 693 670 693 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.43	85	5.8	3.5	1	23	396	418	396	418	0.97
2	9	5.9e-06	0.0012	21.1	0.3	2	23	467	489	466	489	0.95
3	9	0.0027	0.53	12.8	0.7	2	23	495	516	495	516	0.97
4	9	8.8e-05	0.017	17.4	4.1	1	23	524	546	524	546	0.97
5	9	3.5e-06	0.0007	21.8	1.4	1	23	551	573	551	573	0.96
6	9	0.00014	0.028	16.8	1.4	1	23	582	604	582	604	0.99
7	9	1.7e-05	0.0034	19.7	0.7	1	23	610	633	610	633	0.94
8	9	0.031	6.2	9.4	0.4	1	12	639	650	639	662	0.87
9	9	2.6	5.1e+02	3.4	4.2	1	23	670	693	670	693	0.94

Sequence Information

Coding Sequence: ATGTTGCATAACACGGGGCCTTATGGGCCAAACGAGACGCCTGTGAACATGGCAGCACCTGTGAATGTGACCCCTAGTGGCCACATGAATATCGTAAGCAATATCAATCATTTGGCTAAACTAGGCCACGGAAATACCCCAGCGCCCAGCGTACCTTATGGTCTAGGAGACTATGCGGTTTACCACCACCAACATTTCAACATGACCTCGCAAATGCCTCAGTTTCCTAACCATCAATATCAACATTTGGGATTCCCACACAACTATTCGAATCACAATCCTAGTTCAGTTAACGATTGTAATGGTATGCTACCTATGAATTTGAACGTGCATAATGAACTCAATACTAACATGATGTATCCTTATGACCGAAGATACATGGATACAGTTAGACCTGACGTAATTAAAGAACAAAACTCAAGAAAGGTACCGTTGAACATACCTCAAATACCAAATAAAGTGTTACCCAAACAACCTTTATTCGGCAATGATTATTTACACAGTAGTTCATTCCACACCCCAAATCATAATTTAGATTTAAGTATGAAACCACAGGAGAGACTAGAAATAAGTAGctcaagaagaaaaaaaattgaaaacacGGTAAAActgattgaaaatattttaataaactctGCCAATACTCCTAAAGAGACAGTACGAGATACAGTGAATGATATCCCTAATGAAATAGgctttgatgatgaagatgatgaagacGATTACTCTGATCGCTCGGACACATCACCAAAAAGGTCTACAAATGATACAGAAATGTTGCCAGCAGCAAACGAATGTGATCCATTACCTTTAACATTGGCAGAATCAAAAAAAGATAGGGACCAGAAACGTGGTAGCATAATAAAAAGCCCCGTAAACATTGACAAAGCAGAAATGGCAGTTGAAGAAACAGATGAAAACACTCCAGATATAGAAGATGTGAAACCAGTAGATATAACAGTGGAAGTAGTTCCTGATGACTTTCCAGAATCTTCTGACAAAtgcattgaaattaaaattgagAATGCAAGTTGGACTGATACAGATTACGTGCAGCCTTATTTCAGAGATATTCATGCATTCCAAAAAGATGATGCAATGGATTTACGGATCATTGATTGTGACTCTAGTGTCATTGAAGCCATAGCTGCTATTCAAAATAAAGAAGTGAAGTCGGAAGACTGCTACGAATGCCCACACTGTTGcgttattttcaaaaatccaaaGCGATTTCTCATTCACACAAAATGGCACACTTTCGGCCTCACGAACGAGAAGAGACTTGAACTCATGAGGGAGAGAGAGGAGAAGAGAAACCAGCGGAAGGAGGCTAAGATTATTGAGAGGATGAACGCGATGGAGGTGACCGATGAGAAGCAGGTGGAGGGGAAGACGTGGCCTTGTAAGGATTGTGATAAAGTTTTTAGTGCGAAAGGGAGTTTGAAGAATCATCGGCAGAGAGTCCATCCAACGCGTACACGAGAGTGTAGAGTATGTCATAAGTCGCTCGTCGGATGGCTGTCTCTCCGGAACCATATGGCCACTCATGCTGGTGAAGCAGGGGTTGGGTTCCAGTGCAGCCAATGTCCGAAGCGATTTAAGTATTCACATTCGCTTGCTAAGCACTCCGATACACATTTGgaAAAAGTCCACGCCTGTACAGATTGCCCGAAGAAGTTTGGTTCTCAAGCTTTACTCAAGATGCATATGAAGACTCACGAGCGTCATTCAAGAGGAGCCACCTTCAGATGCACCTACTGCGCGAAGGGATTCTTCGAGTCGTACAGTCTACAGGTCCATGAAAGGACACACAGAAACGAGAGACCGTTCCTTTGCGAGATATGCAACACCAGCTACGGCACCAACTCGAGTCTCAAGAGGCATTTGAAAGTTTCTCACAGCACATCCAAGCCGTACGAGTGTTCTGTATGCCACCGCTCGTTCTCGACGGAACCGATACGGGACCGACATGAACAGAGAGCCCACAGCAATCCTGAGGACTTCAAGTTCCCCTGCAAGCAGTGTAAATGCAAGTATTTAAAACTGAAGGACTTACAGAAGCACGTATACAAAGCTCATCCCAAAAACAAGAGAAGGAAAAAGGTGAAAAGCGAAACTGAGCCCGAAGACGATTCAGAATAG
Protein Sequence: MLHNTGPYGPNETPVNMAAPVNVTPSGHMNIVSNINHLAKLGHGNTPAPSVPYGLGDYAVYHHQHFNMTSQMPQFPNHQYQHLGFPHNYSNHNPSSVNDCNGMLPMNLNVHNELNTNMMYPYDRRYMDTVRPDVIKEQNSRKVPLNIPQIPNKVLPKQPLFGNDYLHSSSFHTPNHNLDLSMKPQERLEISSSRRKKIENTVKLIENILINSANTPKETVRDTVNDIPNEIGFDDEDDEDDYSDRSDTSPKRSTNDTEMLPAANECDPLPLTLAESKKDRDQKRGSIIKSPVNIDKAEMAVEETDENTPDIEDVKPVDITVEVVPDDFPESSDKCIEIKIENASWTDTDYVQPYFRDIHAFQKDDAMDLRIIDCDSSVIEAIAAIQNKEVKSEDCYECPHCCVIFKNPKRFLIHTKWHTFGLTNEKRLELMREREEKRNQRKEAKIIERMNAMEVTDEKQVEGKTWPCKDCDKVFSAKGSLKNHRQRVHPTRTRECRVCHKSLVGWLSLRNHMATHAGEAGVGFQCSQCPKRFKYSHSLAKHSDTHLEKVHACTDCPKKFGSQALLKMHMKTHERHSRGATFRCTYCAKGFFESYSLQVHERTHRNERPFLCEICNTSYGTNSSLKRHLKVSHSTSKPYECSVCHRSFSTEPIRDRHEQRAHSNPEDFKFPCKQCKCKYLKLKDLQKHVYKAHPKNKRRKKVKSETEPEDDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167058;
90% Identity: iTF_00909201;
80% Identity: -