Basic Information

Insect: Cybosia mesomella
Gene Symbol: -
Assembly: GCA_946251875.1
Location: CAMIUH010001653.1:108262-133756[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4 2.8e+02 4.2 0.3 1 23 269 292 269 292 0.90

2 12 0.23 45 6.7 0.8 1 23 300 322 300 322 0.95

3 12 0.059 12 8.5 1.1 1 23 326 348 326 348 0.98

4 12 0.0035 0.7 12.4 1.8 1 20 354 373 354 375 0.93

5 12 0.0026 0.52 12.8 1.2 2 23 382 405 382 405 0.88

6 12 0.00048 0.095 15.1 0.6 2 23 418 439 417 439 0.94

7 12 0.00014 0.028 16.8 0.3 1 23 444 466 444 466 0.98

8 12 0.0011 0.22 14.0 4.1 1 22 475 496 475 500 0.93

9 12 3.9e-05 0.0078 18.5 2.3 1 23 508 531 508 531 0.93

10 12 0.014 2.8 10.5 0.2 1 23 537 560 537 560 0.87

11 12 0.018 3.7 10.1 0.4 3 19 573 589 571 590 0.89

12 12 0.0045 0.89 12.1 1.1 1 23 603 626 603 626 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4	2.8e+02	4.2	0.3	1	23	269	292	269	292	0.90
2	12	0.23	45	6.7	0.8	1	23	300	322	300	322	0.95
3	12	0.059	12	8.5	1.1	1	23	326	348	326	348	0.98
4	12	0.0035	0.7	12.4	1.8	1	20	354	373	354	375	0.93
5	12	0.0026	0.52	12.8	1.2	2	23	382	405	382	405	0.88
6	12	0.00048	0.095	15.1	0.6	2	23	418	439	417	439	0.94
7	12	0.00014	0.028	16.8	0.3	1	23	444	466	444	466	0.98
8	12	0.0011	0.22	14.0	4.1	1	22	475	496	475	500	0.93
9	12	3.9e-05	0.0078	18.5	2.3	1	23	508	531	508	531	0.93
10	12	0.014	2.8	10.5	0.2	1	23	537	560	537	560	0.87
11	12	0.018	3.7	10.1	0.4	3	19	573	589	571	590	0.89
12	12	0.0045	0.89	12.1	1.1	1	23	603	626	603	626	0.98

Sequence Information

Coding Sequence: ATGAGGGAAATGAACATTAATATCGAAGGATACAACGTAAATGGAATATGTGTGGGCTGTCTAAATTATAATCGTAATATGTACTACGATAACGACATAAAGACATTCTTCAAATTACTTGGTGATATAGACGTATCAGATGGTTTAGATATTCAAGTATGCTGGGAATGCTTGGCTTATGTGAAAAATGCAATGAAATTTAAAGACCAAATATTAAAATCATTTGATTTCCTCATCAGCTACTCTCAAGAGAACCCATTTTTAAATTCTCCAAATGACTTCGAAGCTCACGCTACTACGAGACTGTCGAAAGCATCCTTCTTAGAAGAATGGCCATCTACCAAGGACAATGTGAAGGAAGATGACATTAAAGCAGAGACTGAAGGAGAAGACTTTGTATTTGATGTGCCTATAAAGGAAGAATTACTAGACCTTCATGAGGACACAGTGTTCGAAGATCTTCCATCACCGGCTCGTGACGTCACTTCCGATGACGACATACAACTATCCTTGCTCAAAGACAAAACAGACCACTTCAAAAGAAAGAGGAAGAAGAAGGAATTGCGGCATAGTAAATTAATGAAGTATGACACCAGAGACAAGACTGATAGAGTTAAGAAACGTAAGACCAAGAAGAAAGAGTTTGAGGACACAACGGAAACAGAAATCCAACAAATTCAAAAGAAGAACAGAAAACTAAAGAATCTTCCAGAAGACATGGTAGAGTTGTACACTATGACAGAGAAAGAGATGTGGGTGATACGGGCAGAAGATAGAGACAGCAAGGAGTTTGTGAAGCTGAAGTTCAAGTGTGACGATTGTATCATAGCGTTTAATACGGAGAAATTGAAGTTGGACCATTTGAATGGTAAACACCAAGAGaAAGGCGAGAACTGCCATCAATGTACAATATGCCAGGCTTATTTCTTAACAAAAGACAACGTGGCATCCCACCGCGCCCTCCACCTCTCTGCTTATAAATGTACCCTTTGTGGAATGCAAACGACACTTAAAATACGTATGCTCAAGCATATAACTACGCACAGGGATGTTCAGCAGCATAGCTGTGATACTTGTGGCAGTAAATTCAGtacAAAATCGAAACTCTCATACCATCGCTCCGTTTGTCGACAAGAGAGGCCACAGTGCGATTGTTGCGGCAAGGTGTTCGCTAATAAAATGACTCTGAAGTATCATCTCAAGATACTGCCTCACAACAAAGATGAGAAACCAAAGGAGAAGTTGTTCATACCGTGCAAGGGCTGCGACAAGATATTCCACTCCAAGAAGAGTTACAGGGCTCATGTTGTGATCCACGACGGGTTAACATACCCGTGTCCGATTTGCGGCAAACTCTTCCAATGGAAGCGGAATCTTGCGCGTCACACGCGGAACCATCGCGAGAGAGAAGCCGGTGCTCTACACGAGTGTAGAGCTTGCGGGAAGAGCTTCGCCAGCAGGGATTGCTACAACAACCACATGAGAATGAGCAAGCGACACGTGCCTGAGGATGCCTACCAACACGAGTGTACTTACTGCGGCAAGAAGTTCCCGACCAAATGGTGTCTCACCGACCACATCGACTGGGACCATCTGAAAAGGATCAAGTACCAGTGCAGTGTCTGTTTTAAGGCATTCAAAACAGCAAAAATTATGGTGGCCCACGTCAACAATATACACGAGGGGAAGAAGAAGGAAGCAGAAGGCGAACACTTGTGCGAGATTTGCGGCAAGTCTTATAAGACAGTGAAACGTCTAAAAGGCCATGTATGGGCGATGCATACTAAACGGTCCAACACAAAAAGTTATAAGTGCAAGCTATGTCCGGCTACGTTCACTTGGCAGACCAGCATATACAAGCATATGAAAATGATGCATGATACAAATAAGAAGACTAAGCCCCCGCGTGTCGTTCCTCCGGTGAAGAAAGAAGAGCCTTATCCAGGAATCGAACTGGCGAACCATATGCAATTTTTGAACATAGTACATTTACAACCGTTGGGTGTGAATcaaaacttaatttaa
Protein Sequence: MREMNINIEGYNVNGICVGCLNYNRNMYYDNDIKTFFKLLGDIDVSDGLDIQVCWECLAYVKNAMKFKDQILKSFDFLISYSQENPFLNSPNDFEAHATTRLSKASFLEEWPSTKDNVKEDDIKAETEGEDFVFDVPIKEELLDLHEDTVFEDLPSPARDVTSDDDIQLSLLKDKTDHFKRKRKKKELRHSKLMKYDTRDKTDRVKKRKTKKKEFEDTTETEIQQIQKKNRKLKNLPEDMVELYTMTEKEMWVIRAEDRDSKEFVKLKFKCDDCIIAFNTEKLKLDHLNGKHQEKGENCHQCTICQAYFLTKDNVASHRALHLSAYKCTLCGMQTTLKIRMLKHITTHRDVQQHSCDTCGSKFSTKSKLSYHRSVCRQERPQCDCCGKVFANKMTLKYHLKILPHNKDEKPKEKLFIPCKGCDKIFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHREREAGALHECRACGKSFASRDCYNNHMRMSKRHVPEDAYQHECTYCGKKFPTKWCLTDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHVNNIHEGKKKEAEGEHLCEICGKSYKTVKRLKGHVWAMHTKRSNTKSYKCKLCPATFTWQTSIYKHMKMMHDTNKKTKPPRVVPPVKKEEPYPGIELANHMQFLNIVHLQPLGVNQNLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01502456;
90% Identity: iTF_00636827;
80% Identity: -