Cmes014072.2
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- Zbtb41
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000398.1:383938-387860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3 2.7e+02 4.3 2.2 2 21 160 179 159 180 0.91 2 17 7.4 1.5e+03 1.9 0.4 3 23 188 208 187 208 0.86 3 17 0.0073 1.4 11.4 2.3 1 23 213 236 213 236 0.95 4 17 0.003 0.59 12.6 2.5 2 23 242 263 241 263 0.95 5 17 0.13 25 7.5 1.7 2 21 267 286 266 287 0.92 6 17 0.0041 0.81 12.2 0.1 3 23 330 351 328 351 0.95 7 17 4.1 8.1e+02 2.8 0.9 5 23 361 378 358 378 0.86 8 17 0.0014 0.27 13.7 0.2 1 23 384 406 384 406 0.98 9 17 0.0058 1.2 11.7 1.9 1 23 412 435 412 435 0.95 10 17 0.005 0.99 11.9 0.5 1 23 444 467 444 467 0.94 11 17 0.04 8 9.1 4.8 1 23 476 498 476 498 0.97 12 17 0.022 4.4 9.9 0.4 2 20 624 642 623 644 0.95 13 17 0.00058 0.11 14.9 3.4 1 23 674 696 674 696 0.98 14 17 7.3e-05 0.014 17.7 2.2 3 23 703 723 701 723 0.93 15 17 0.0043 0.85 12.1 5.6 1 21 757 777 757 780 0.94 16 17 0.00022 0.045 16.2 2.9 1 23 786 808 786 808 0.98 17 17 1.6 3.2e+02 4.0 2.2 6 23 819 837 817 837 0.92
Sequence Information
- Coding Sequence
- ATGACACGGCAAGTGGATATCAAGGCTTTGGTATCCCATATAGTACGTGGAGACGGAGCAGACAGATGCCGAATATGTATGGGTGATACGTCGGAAGGGCAAGTCCACTTAGAAGATACGGTTATGATGGATGGTGAAAAGCCCGTAACACTCGCTGAATTATTAGAAGTTATCACAGGAGAAGAAGTGCAGCTGGATGGTGACCTGCCTGTAGGACTCTGCTCCACATGTGCAGTATCAGCCCTAGAAGCAGCTGATTTCAGGACATTGTGCCGACAAGCTTCGATACAGTGGGACACAACTGTAGAACTTCTAAACAGTTTGCCGAACAAACTAATAACGGAGGGCAGCGAAAAGATTATTGCTGTGCTAAGAGATGATACCATATCCATTACCAATGAAAAAgttaaagaaaacaataaactaACCGAgcttaaatataaaactaacgaTCATAACGCTGTACATAAGAAGTGCAAATGCCCTTTTTGTGCTAAAACGTTTCTATATGCCCTACATTTGAGTCAGCATTTGAAAGAGTCTTCCGATAATAAACGTGCCTGTCACATTTGTGCCAAAATTATGTCTAGAGATGACCTAGTGAAGCATTTGATAGATAAACATTATAGGGAGCCGCATGATTGTAAGCAATGTCCTGCTATGTTCTATACAAAACAACAGTATAAAGATCACTTGAGCAAGGCACATGCTTCTGGGGCATGCACATGTGGGGAGTGTGGACGTAACTTTCATAATTCTTACGCTTACTACGCTCATCTTTCTGTTCACACACCAAAAAGGTGTCCAGGTTGCGATGAGTTATTCAGAAACCAGAAATGCTATTATTACCATGTTAAAAGCTGTTGTAATTTAGATAAAGATCGTTTAGATACTCATAAAACTAAATCCAAAACAACCGTAactgttaaaaagaaaaataaaaacatcagaGTTGGAATGAGAGGGAGTGCAAACACTGAAAGTATATGCGATTACTGCAATAAAAAATTTGCTGGAAAGAAATTTGTGGCCGCCCATATACAAATAGTTCACATGAAAAATACTCACCGTCCTTGCATATACTGTGGAAAATTTCTTGCATCTGCACATATGACTACGCATATTAAAAGACACGAGATAGCAGAGACTTATCAGTGTGGTTATTGCGGTATAGTTCTTAAATCGAAAGTGGGCTACGACCAACATTTACGTCTTCACACTGGAGAAAGACCGTACATTTGTAAAATCTGTGGAGAATCTTTCACAGCGTCGTCTAGGCGCTCAGAACATGTACGAAAGTGCCACCAAGTGTCAGAAGTTGTTTTAAAACACGCTTGTGAATTCTGTCCGGCACGATTCAGACTACCCTATCGTTTAAGAAGGCATATTGCCAGTGTTCATGGTGAAGGGAAAGAGCAGTTGCTCTTCAACTGTAGTGCATGTCCACAAAAATTTAGCAGTTGTCGGGGATTGCTACATCACAGTAGAACACATCAAGAAGCTGTAGACATACCAGACGATCCTACTTCTAGTGTAGTCGAGGATACATCACCGTTGCCCAAGAAACTCTGCGGGCGGTGCAAACACGACCTAAAAGCAATGCTACCCTTCATCACATTATGCAGAACCTCAGCTAAACGATGGAGTGAAATCGCagattatttgtttaaattcacTATcccaaacaaaactaaaaatgcTTATATTCTTGTTAAGAAAGATATCGAAACGTTCACAGATACTGCGCGATGTCCAGTTGGCAAAATAAAAACGCGTCAAGAGGCGTTAAAACGGTTTAAAATTCGTTTATACCGCCAAACTAACTACAAAATTCGATCAAAAAGACGTGTTTTGagtgataataaaatgaaatgtcTCAAGTGCGGCGCCCAATTTTCTGATCTCTTTAAATTCAATAAACACATAGGGAATCTGAAAAAGAAGATGTGTGGAATATGCTACAATATCATAGATGTAGTTTTATACAAAGAACACTGTATGTCCCACAATTTGAACATCTTCTCCTGCCACATCTGCTATGAAACATTCGAAAGAGAGTCTACTTATATGTCACATCAACTTAAACATCAAAATGCTTCTATGACATGCATTGAATGTCATAAATCTTTCAAAAATCCAGTATATTTAAATACTCATATGAATAAACACAGAACTATAACGTGCGCTTGCGGCAAATGGCTACCGAATCGGACCTGCTTTTTCAATCACAAGAAAAAGTGTTCTCAACATAAGAAAACAAAGTCTAAATTCATTTGTGACTATTGTGGTAAAGAGTACAATCGAAAGAATTGCCTTCGAATGCATATAAAGTGTACGCACACTGTTGGATGGCAGTTCCAATGTGACAAGTGTGGCAAGAAGCTATCAAGTCGAGCACATTTGGTCGAACACGCGCATACGCATGATAAAGTTCCAGATAGATATGTCTGTTTCTGTGGCGCGAAATACAGCTCAAGGCGAGGGTATCAGAGACATACTAAGTTTAAGCATGAAAATACGGACAATTCGGACGTGAAAtatgattttataataacaaCAGAGCTGGTGAACAATGTGACTACAATGTACAATTAG
- Protein Sequence
- MTRQVDIKALVSHIVRGDGADRCRICMGDTSEGQVHLEDTVMMDGEKPVTLAELLEVITGEEVQLDGDLPVGLCSTCAVSALEAADFRTLCRQASIQWDTTVELLNSLPNKLITEGSEKIIAVLRDDTISITNEKVKENNKLTELKYKTNDHNAVHKKCKCPFCAKTFLYALHLSQHLKESSDNKRACHICAKIMSRDDLVKHLIDKHYREPHDCKQCPAMFYTKQQYKDHLSKAHASGACTCGECGRNFHNSYAYYAHLSVHTPKRCPGCDELFRNQKCYYYHVKSCCNLDKDRLDTHKTKSKTTVTVKKKNKNIRVGMRGSANTESICDYCNKKFAGKKFVAAHIQIVHMKNTHRPCIYCGKFLASAHMTTHIKRHEIAETYQCGYCGIVLKSKVGYDQHLRLHTGERPYICKICGESFTASSRRSEHVRKCHQVSEVVLKHACEFCPARFRLPYRLRRHIASVHGEGKEQLLFNCSACPQKFSSCRGLLHHSRTHQEAVDIPDDPTSSVVEDTSPLPKKLCGRCKHDLKAMLPFITLCRTSAKRWSEIADYLFKFTIPNKTKNAYILVKKDIETFTDTARCPVGKIKTRQEALKRFKIRLYRQTNYKIRSKRRVLSDNKMKCLKCGAQFSDLFKFNKHIGNLKKKMCGICYNIIDVVLYKEHCMSHNLNIFSCHICYETFERESTYMSHQLKHQNASMTCIECHKSFKNPVYLNTHMNKHRTITCACGKWLPNRTCFFNHKKKCSQHKKTKSKFICDYCGKEYNRKNCLRMHIKCTHTVGWQFQCDKCGKKLSSRAHLVEHAHTHDKVPDRYVCFCGAKYSSRRGYQRHTKFKHENTDNSDVKYDFIITTELVNNVTTMYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -