Basic Information

Insect: Cybosia mesomella
Gene Symbol: -
Assembly: GCA_946251875.1
Location: CAMIUH010001431.1:245625-266304[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.76 1.5e+02 5.0 2.2 3 23 42 63 40 63 0.90

2 14 0.00011 0.023 17.1 4.0 1 23 101 124 101 124 0.97

3 14 4.6e-05 0.0091 18.3 3.0 1 23 126 148 126 148 0.98

4 14 4.2 8.4e+02 2.7 1.4 1 20 157 176 157 179 0.72

5 14 0.0021 0.41 13.1 0.2 1 23 184 206 184 206 0.98

6 14 0.083 16 8.1 1.3 3 23 234 255 233 255 0.92

7 14 1.4 2.7e+02 4.3 4.0 1 17 262 278 262 284 0.75

8 14 0.0013 0.26 13.8 0.1 1 23 290 313 290 313 0.92

9 14 0.00045 0.089 15.2 2.0 1 23 322 345 322 345 0.97

10 14 0.00013 0.026 16.9 0.1 1 23 350 374 350 374 0.98

11 14 0.0027 0.54 12.8 0.4 1 23 407 429 407 429 0.92

12 14 0.00018 0.036 16.4 0.8 1 23 435 457 435 457 0.97

13 14 0.00014 0.028 16.8 4.1 1 23 463 485 463 485 0.98

14 14 0.068 13 8.3 4.6 1 23 491 514 491 514 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.76	1.5e+02	5.0	2.2	3	23	42	63	40	63	0.90
2	14	0.00011	0.023	17.1	4.0	1	23	101	124	101	124	0.97
3	14	4.6e-05	0.0091	18.3	3.0	1	23	126	148	126	148	0.98
4	14	4.2	8.4e+02	2.7	1.4	1	20	157	176	157	179	0.72
5	14	0.0021	0.41	13.1	0.2	1	23	184	206	184	206	0.98
6	14	0.083	16	8.1	1.3	3	23	234	255	233	255	0.92
7	14	1.4	2.7e+02	4.3	4.0	1	17	262	278	262	284	0.75
8	14	0.0013	0.26	13.8	0.1	1	23	290	313	290	313	0.92
9	14	0.00045	0.089	15.2	2.0	1	23	322	345	322	345	0.97
10	14	0.00013	0.026	16.9	0.1	1	23	350	374	350	374	0.98
11	14	0.0027	0.54	12.8	0.4	1	23	407	429	407	429	0.92
12	14	0.00018	0.036	16.4	0.8	1	23	435	457	435	457	0.97
13	14	0.00014	0.028	16.8	4.1	1	23	463	485	463	485	0.98
14	14	0.068	13	8.3	4.6	1	23	491	514	491	514	0.96

Sequence Information

Coding Sequence: ATGGACTCACCCATTCAGTTAGACGAGAGCGGCGGGGAGTGGTTGGCGGAGTTAGAGCAGCTGTTAGGTGGCTGCCCGAAGGCCCCGAAGCCGACCGCCATCGACTTGATCGGCGGCATCTTTTGCAACATATGTCATTCTACATTTGGAAATAAGAAAGTGTTCGACCGTCACTACACTGAGCAGCACAACAGGATTCCTACAGCCATAATGTACACTTGCGTAGTGTGTCGCAGGGAGATAGCCCCATACCCAAACTTCCGCAACCACTGCTACCAGGCACACGTCGTTAAAGACAGGTTCAAATGTGAACAATGCAACAAACAATTTTGTAAACAATCCGTATTGACCAGTCATATTAATTCTATGCATTACTTCAGGTGTGCGTCATGTCAGAAAGAATTTTCATCCAAAAGTGAACTACACACACATCAAAACATTcacaagagagagagagaaaaacCTCCGTACCCTTGCCACCAGTGCTCCAAGACAATTGAAAGTGTGGATATGTGCGAGATGCACATCGATGAACACTGCAAGTTTTTGTATCCTTGTCCGATCTGCAACGAGATAACCAGCAGCAAAATTGAAACCACTAGACATCTCACAAAACATTTCGACGAAGTACTTACTAATGAAATCGTCAGCACTGAAATTAGTACAGATTGTTCCATTGACATGCTTGGAGGAGTTTTGTGCTCATACTGCGACGAACTATTCAAGAATAGAGCCGACTTCGATCATCATTTCATCAATGAACATTCAGACAAAGATATTGTTTACTCTTGCAACATTTGTGGTGAACAGTACCAGAAATACCATTTATTCGCCGACCATTGCTACCGTCATGTCGCCAAAAATAGATTCGAATGTGTAGAGTGTGGCAAGCTTTTCCCGCGCCTCTCCCTCCTCGTGCTTCACACGGAGGCGTTCCACACGACGGGCTCGGGTGACAAGCCGTTCAGCTGCTGCCAGTGCGGGCACGCCTTCGGCACTGCTTCGCGACTGCGTGAACATCTGCGAGTCGTGCACACTGTCAACGCCTTCACGTGCCCCGAGGAAGGATGCAATATGATATTTGACACCCCCAGAGATCTGGTCCTCCATCAGCGCAAACACAAAGTCTCTCTCAATAACTGGTGTCGCCAGTGCAGCCTACAGTTCACTACGCTGTCCTCTTGCCAAGTCCATCTCGACTTTCACCGTAAAGAACATTACGCCTGCCCTATCTGCAATAAAGAATATCGAGAGAAACATCTCATTATAAAGCACATACCGACACACTTCGAGTCTGTGCTTCACGTCTGCAAGGTCTGTGGCAAAGTGTTTAATGCTCGCGGCCGGCTAGTCGAGCACACAAAAACGCACTCAGACATAAGACGTCATAAATGCAGCTATTGTAACAAAGGATTCATGAAGGCACATCAGCTTGAACAGCATCTGAACATACACACTGGTTTGAGGCCTCATAAGTGCATGATCTGCTCGAAAACCTTCGCTAGTTATCCGAACTGCATGAAGCATCTAAAAAATATACACGATATAGATAGAAACAAGCTGAAAACACTCGTAGAGGAATCTAAAAAAGCTGCCAAAAACGTTTCCGctgataaaaatacaaataatattgataaaagtGACGCAGAAATGAAAAGTGAGTCGGGAATCGAATCTACGAGTCCTGAGGTATCATTAGATACGTACATATTCGCCGAGTCGGATGACAGCACCATGGACAGCATAGACCCGGCGATCATTGTCAAAGATTGGTCCATTCTGAACGAAAACTCTATAATCGACAATAGTCCACAATACACAGAAATGCTACCGTTTACAAACACTACATTCGAAACTGcGCTTACAGAAATAAAAGCAACTCCGCCGGAAGTGTCAGCGGTGTCACACAATGCGGTGCTGCGAGAGTACGGGCCCGAGTTCAACGTGGACGACGGCATTCACCTCGACGACCACTACCTGCCGCACATCGACCCCATGCTCACCATGAAGCACCCCCGCCTGCCGCCCTCGCACAAGCTGTACGTCAACAGCGACTACGACACTCCGGCCTCCGCCCCCGTCGCCCCGCCGGGCTGGGAGCCCCTCCTCACGAAGGTATACCACACCTATGAATCAGACGACGTCAACAGACTTTCCATTATGAACACTGATATATACTAA
Protein Sequence: MDSPIQLDESGGEWLAELEQLLGGCPKAPKPTAIDLIGGIFCNICHSTFGNKKVFDRHYTEQHNRIPTAIMYTCVVCRREIAPYPNFRNHCYQAHVVKDRFKCEQCNKQFCKQSVLTSHINSMHYFRCASCQKEFSSKSELHTHQNIHKREREKPPYPCHQCSKTIESVDMCEMHIDEHCKFLYPCPICNEITSSKIETTRHLTKHFDEVLTNEIVSTEISTDCSIDMLGGVLCSYCDELFKNRADFDHHFINEHSDKDIVYSCNICGEQYQKYHLFADHCYRHVAKNRFECVECGKLFPRLSLLVLHTEAFHTTGSGDKPFSCCQCGHAFGTASRLREHLRVVHTVNAFTCPEEGCNMIFDTPRDLVLHQRKHKVSLNNWCRQCSLQFTTLSSCQVHLDFHRKEHYACPICNKEYREKHLIIKHIPTHFESVLHVCKVCGKVFNARGRLVEHTKTHSDIRRHKCSYCNKGFMKAHQLEQHLNIHTGLRPHKCMICSKTFASYPNCMKHLKNIHDIDRNKLKTLVEESKKAAKNVSADKNTNNIDKSDAEMKSESGIESTSPEVSLDTYIFAESDDSTMDSIDPAIIVKDWSILNENSIIDNSPQYTEMLPFTNTTFETALTEIKATPPEVSAVSHNAVLREYGPEFNVDDGIHLDDHYLPHIDPMLTMKHPRLPPSHKLYVNSDYDTPASAPVAPPGWEPLLTKVYHTYESDDVNRLSIMNTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01166992;
90% Identity: -
80% Identity: -