Cmes018167.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000535.1:325278-339584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.2 40 6.8 0.0 5 23 144 162 142 162 0.95 2 13 0.005 0.99 11.9 0.5 2 23 167 188 167 188 0.98 3 13 0.0059 1.2 11.7 5.0 2 23 195 217 194 217 0.97 4 13 0.2 40 6.8 0.0 5 23 289 307 287 307 0.95 5 13 0.005 0.99 11.9 0.5 2 23 312 333 312 333 0.98 6 13 0.0059 1.2 11.7 5.0 2 23 340 362 339 362 0.97 7 13 0.00047 0.094 15.1 1.5 2 23 371 393 370 393 0.96 8 13 0.00013 0.026 16.9 2.9 1 23 398 420 398 420 0.97 9 13 0.0024 0.47 12.9 2.0 1 23 426 449 426 449 0.96 10 13 0.0014 0.28 13.7 1.8 2 21 455 474 454 475 0.92 11 13 0.97 1.9e+02 4.7 0.1 2 23 480 501 479 501 0.93 12 13 0.00017 0.034 16.5 0.3 1 23 507 529 507 529 0.98 13 13 4.7 9.3e+02 2.6 0.2 2 11 536 545 535 550 0.86
Sequence Information
- Coding Sequence
- ATGACCATGGAAATGTGTAGAGTATGTTTATCAACTGAAAAAGGAATGCATGCATTGGACGAAACTTTTGTTTTACAATACAACTTAATCACTAATCTTAATATTTGCTTATCAGATGGAAAGCCACAATTTACATGTAAAACTTGTTTAGAAACTgtcaaatattatataaaattccGAGAGAAGTCTATTGCATCGGAGGAATCTTTACGGGAAATTATTTGTGCAAGTGTTAAGTTGGAAGACAAACATACTGTAACAGAATTAGAGGAGCGGAATACTTTCAAACCAGATGACAGTTTAAAAAAGCAAATTAAATAcgaaataaaagaagaaaaagatgTAGATAGGGACACTGAATTAGATAACTTTGATGTCACATTTGAGCTATATGACAGTGATATACACAACCATGTTAAAGACGAAGGCATATGCCCCGAAGTATTTGTAGAAGACAATGATTTGAATAAACACTTAGATATCCATAAGGATGAGAGGCAATGTGAGCTATGCAAAGAAAAAGTAAATAGCCTATCTCAGCTCCTAGCCCATAGATTGAAACATGTATCTCAAAAACAGTTAAGATGTCAcatttgtttgaaatcataCAAGACTTGCTTATATTTGGAATATCATTATAGAACTGTGCATATTGATGATGATAATATTAACTTGGAAGACAAACATACTGTAACAGAATTAGAGGAACAGAATTCTTTCAAACCAGAtgacagtttaaaaaaactagttaaatgtgaaaaaaaagaagaaaaagatgTAGATAGCGACAGTGAATTAGATAACTTTGATGGGTCATTTGAGCAATATGACGGTGATATACACAACCACCCTAAAGAGGAAGGCATATGCCCCGAAGTATTTGTAGAAGACAATGATTTGAATAAACACTTAGATATCCATAAGGATGAGAGGCAATGTGAGCTATGCAAAGAAAAAGTAAATAGTCTATCTCAGCTCCTAGCCCATAGATTGAAACATGTATCTCAAAAACAGTTAAGATGTCAcatttgtttgaaatcataCAAGACTTGCTTATATTTGGAATATCATTATAGAACTGTGCATATTGATGATGATGACTCAATACTCACTTGTAAGATTTGTTTGTCAAGCTTTCACACTCCGAAAAATTTGCAAAGCCATATGTTAAGCGTCCATTCTACCGCTCAATTTTTTTGTGACTTCTGTTCTAAAGGTTTCGCTAGTAAGCCAAATTTGAGGTCTCACATAAAACATCACAGTGGTATCAAGTCTTATGTCTGCGATCTATGTGGATACTCTTGTAATTATAGTAATGGACTTAAAGACCACAAAATAAGAAAACACTCTGAGAAGAAAATTTACTGTAAGAATTGTGGGAGACCATTTTCAAACCAACAAGACTACGATAGGcatacatgtaaaaaaaagctaaTAGTTTGTACTATCTGCGGACTGCAAATCAATGGTAATGCTAGGATATCAAGCCACATGAAAAGTCATAGCAACGTTTTCAAATACGAATGCGAGCGTTGTCCTGCTAAATACAAGTCAAGTGGCGCATTGAAGGTTCACCGCAATAGACACGACGGTATCCGCACCAAGCAGTGCGATTACTGCCCAGCGAAGTTTTATTCTGATACTGTGTTGgTGAAAGACCTTACGTATGTAAGGTATGCCACAAAGGATTCACAGGGAACCACAATCTCAAGGTCCATATGA
- Protein Sequence
- MTMEMCRVCLSTEKGMHALDETFVLQYNLITNLNICLSDGKPQFTCKTCLETVKYYIKFREKSIASEESLREIICASVKLEDKHTVTELEERNTFKPDDSLKKQIKYEIKEEKDVDRDTELDNFDVTFELYDSDIHNHVKDEGICPEVFVEDNDLNKHLDIHKDERQCELCKEKVNSLSQLLAHRLKHVSQKQLRCHICLKSYKTCLYLEYHYRTVHIDDDNINLEDKHTVTELEEQNSFKPDDSLKKLVKCEKKEEKDVDSDSELDNFDGSFEQYDGDIHNHPKEEGICPEVFVEDNDLNKHLDIHKDERQCELCKEKVNSLSQLLAHRLKHVSQKQLRCHICLKSYKTCLYLEYHYRTVHIDDDDSILTCKICLSSFHTPKNLQSHMLSVHSTAQFFCDFCSKGFASKPNLRSHIKHHSGIKSYVCDLCGYSCNYSNGLKDHKIRKHSEKKIYCKNCGRPFSNQQDYDRHTCKKKLIVCTICGLQINGNARISSHMKSHSNVFKYECERCPAKYKSSGALKVHRNRHDGIRTKQCDYCPAKFYSDTVLVKDLTYVRYATKDSQGTTISRSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -