Cmes055132.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- ZEB2
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010002246.1:69778-78768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 3.6 10.1 1.8 1 23 218 241 218 241 0.97 2 12 0.00078 0.15 14.5 9.4 2 23 246 267 245 268 0.94 3 12 0.0013 0.26 13.8 2.4 1 23 271 293 271 293 0.98 4 12 5.5e-05 0.011 18.1 1.9 1 23 299 322 299 322 0.97 5 12 1.2e-06 0.00023 23.4 0.1 3 23 330 351 329 351 0.98 6 12 8e-07 0.00016 23.9 1.6 1 23 357 380 357 380 0.97 7 12 0.18 36 7.0 7.4 1 23 387 409 387 409 0.98 8 12 1.2e-05 0.0024 20.2 0.9 1 23 413 435 413 435 0.97 9 12 0.0022 0.43 13.0 1.6 1 23 445 467 445 467 0.96 10 12 9.6e-06 0.0019 20.5 2.6 1 23 473 496 473 496 0.97 11 12 0.00019 0.038 16.4 1.0 1 23 531 554 531 554 0.92 12 12 5.4e-05 0.011 18.1 0.6 1 23 559 582 559 582 0.96
Sequence Information
- Coding Sequence
- ATGAGCGAAATATGGAATTTAAGTACACTGTGTCGCTGTTGCCATTCGGACGGGTGTTTCAAGAAGCTAAACCGGCCGTATCAAAGTGAAAATGCTATTGAAATATATGAAATTATGTTACAGGAGACCTTAGGCATTAAAATAATTCAGCCCACAATGGATCAAGCTTCCTATACAATATGTGATACCTGTATAAAGAGGTTGCAAGATGCCTCTTGTTTCAGAGAACAAGTTATGGCATGCGAGCAAAAGTTTAAGGTTTATTTTACTAATGAACAGTTCTTCAGCAGCGGGGTCCAGTTAGAAAACGTGAAGGCAGAAGTGGAGTGTAATGAGAGGGAAAATTATGATATGAACGTAGATGATGATGAACACAGAGATGATGATTTACATCCCAATGACTGTGATAGAACTACAACTCCCGTAGAAGAAGAGATTAAAATTGAAGTGGACCTAAGCTATCCTATCGAAGCAAAAGATGAGAACACATCAGTTAAAGAGAATATCAAAAAAGAAGACAAAATTGCAGCTGTCAAGAAAGTTAAGCAGAAGGGGAAACCTGGTGAAAGGAttctacagagcgtcaaaaATAACCGCCGCAAATTATTCGCAACATACATAATCACCAAAAAAATCAATAATGGTATAACATACTCTTGCAAGAATTGTGAGGGTACTTACACTACTAAAAAAGCCATATACAAACATATATTCACCAACCATGACAAACGTTGCAAGTGCGAGCAGTGCGgcaaacattttaaattcaTATCACATTTAGAGAAACACGTAAAAATTCATCATGGGACCTATGCGTGCCGATTTTGCGAAAAGAAATTCGACTCCAAATACAGATTAATTACTCATGAAAAAACACACACCAACCAACCGACTTATCAATGTGATTACTGTCAAAAAGAACTTAAGTATAAAAATACTCTACGAAAACATATTTTATCACTCCACACCGAGAATAGATCAGTATTATGTGACATATGCGGGTGGGCTTTCAATCAACGGAGTAATTTAGAAGGTCACATACGAACAGTACATTTAAAATTGAGACCATTTCCCTGCACGATTTGTGGGAAGACTTATACAGCAAAGAAACATCTCAAAAGTCATATGAAAATAGCACATTCTGGTAACCCCAAACCATATAAGTGCGATGTCTGTACTAAAAGTTTTGCTTgtcacaaatattttaaaatccaTAAATTGACACACGAAAATCATTTTGCTTGTAGATATTGTTCGTTggtgtttaataataaaaaagatttgGAAATTCATATGAAATCTCATACTACAAAACACCTATTGAACAGTCCTTATTCGTGTCATATCTGTGGGAAAGTTTTATTGTCACGATTCACTTTAAATCGTCACTTAGACAACCATAGTGGTATCAGAAAGTATTCTTGCGAAGTCTGTGGTCTAAAATTCACTCAAAAAGCGTTATTAAAACGTCATCATCTACGAAAGCATGATCCTGACGTGAAAATTGAAAAAGTAAAGTGTGATTTGTGCAAAAAGCTCGTTAAAAATATCGAAAAGCATATGGATATTCACGATGCTGACAAGAGAAAATTCTTTTGCGATATGTGTGGAAAGAATTATCCGACAAACAACGCTCTGAATCGCCATAAAGAACAGAAGCATTTTGGCGTGTCGTACGATTGTGATGTATGtggcaaaaaatatattaagaaggGTAGTTTGCAAactcataaattaaaaattcataaaattaaaaaagaaattgtagAGAATGTTGCCAGCATACAAGATACGGCGCTAACTAGTGCAGTGATGTGA
- Protein Sequence
- MSEIWNLSTLCRCCHSDGCFKKLNRPYQSENAIEIYEIMLQETLGIKIIQPTMDQASYTICDTCIKRLQDASCFREQVMACEQKFKVYFTNEQFFSSGVQLENVKAEVECNERENYDMNVDDDEHRDDDLHPNDCDRTTTPVEEEIKIEVDLSYPIEAKDENTSVKENIKKEDKIAAVKKVKQKGKPGERILQSVKNNRRKLFATYIITKKINNGITYSCKNCEGTYTTKKAIYKHIFTNHDKRCKCEQCGKHFKFISHLEKHVKIHHGTYACRFCEKKFDSKYRLITHEKTHTNQPTYQCDYCQKELKYKNTLRKHILSLHTENRSVLCDICGWAFNQRSNLEGHIRTVHLKLRPFPCTICGKTYTAKKHLKSHMKIAHSGNPKPYKCDVCTKSFACHKYFKIHKLTHENHFACRYCSLVFNNKKDLEIHMKSHTTKHLLNSPYSCHICGKVLLSRFTLNRHLDNHSGIRKYSCEVCGLKFTQKALLKRHHLRKHDPDVKIEKVKCDLCKKLVKNIEKHMDIHDADKRKFFCDMCGKNYPTNNALNRHKEQKHFGVSYDCDVCGKKYIKKGSLQTHKLKIHKIKKEIVENVASIQDTALTSAVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -