Basic Information

Insect: Cybosia mesomella
Gene Symbol: -
Assembly: GCA_946251875.1
Location: CAMIUH010001162.1:119652-129994[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.011 2.1 10.9 0.3 8 23 430 445 429 445 0.96

2 8 4.8e-06 0.00095 21.4 2.2 1 23 451 473 451 473 0.98

3 8 7.4e-06 0.0015 20.8 0.6 2 23 482 503 482 503 0.98

4 8 8.2e-06 0.0016 20.7 0.7 1 23 509 531 509 531 0.99

5 8 2.2e-07 4.4e-05 25.6 2.6 1 23 537 559 537 559 0.98

6 8 5.2e-07 0.0001 24.4 1.3 1 23 565 587 565 587 0.97

7 8 6.4e-05 0.013 17.9 7.5 1 23 593 615 593 615 0.97

8 8 6.4e-05 0.013 17.9 0.9 1 22 621 642 621 642 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.011	2.1	10.9	0.3	8	23	430	445	429	445	0.96
2	8	4.8e-06	0.00095	21.4	2.2	1	23	451	473	451	473	0.98
3	8	7.4e-06	0.0015	20.8	0.6	2	23	482	503	482	503	0.98
4	8	8.2e-06	0.0016	20.7	0.7	1	23	509	531	509	531	0.99
5	8	2.2e-07	4.4e-05	25.6	2.6	1	23	537	559	537	559	0.98
6	8	5.2e-07	0.0001	24.4	1.3	1	23	565	587	565	587	0.97
7	8	6.4e-05	0.013	17.9	7.5	1	23	593	615	593	615	0.97
8	8	6.4e-05	0.013	17.9	0.9	1	22	621	642	621	642	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGTTGTCGTGTGGGGAGTGGTGCGATGTGAAACTATTGTGCGGCGGCCGGGCATTCAACGCGCATCGCACCGTGCTCGCAAGTGTTAGCACTTTTCTCAGACGAATATTACTTGCCTGCCCGTCTgaggaaacgccaacattcatAATCTTACCCGAATTTGACCTCGACGCTTTGACATCAGtgctttattacatttataatgGCGAAGTTATAATCCCAAAGCAGAAATTAgaaatgtttttagacataataaaagctatgcaaatatttgttgacAGTCAGTATTTTCCGCAACCTACTGATAGTGATTACAATAATTCCGATATAGGTTATGGATTTGAATCGGATTTATCTCAGAGGAATATATTTACTTTAGGATCGAAAGATTCCCAAGATcaacaatatattaattttaaaaaacgcAACGAGAACCTGGATCCGCTTTTGCAATATTCAGTAAGAAAGTTGAATTGCACCGATACTCTAGTACGTTCACAGAATCCAAGTGGAGAGCGTAAGCCTTCTTTAGGAAATCTGAAATCGCCATATGGAGACCGACAAAGGAACTCATTTCTACGTGATTTATTTATCGAGACATATCCTCGAAACGGTAATGTTAACGGTCTCACGGCAGGCGTGCTAGCAATATCAAATGAATGCTATCGTGCTCCAACATCTGTGTTCTTGACGAATGCAAATGGCAAAGATCTTAACGACACACTCTTAGAACCATATAAAAAAACGAGTGAGCACATCAGTAATTCGTCTTCAGTATTCCACATTCGCAAACAGCAGCGATGCACTCGGGGTGAACAAGATTACGGCAAGACTTCTAAAAGTTTCTATGACTCTTTCGCAAATGTTTGTTCGGTtgagaaaattaataacaaGTACGTGTTTGACTCCGAAAGCAGAAATTCCAGAAATAATGAATGGATTAATCATGTTCCCATACCTGAAAATGGCATCTTGCAAATAGGTGTTCAGAAACAAATATTATCTGGATTGTATGTTCCTTCTATAGATTACAGCGTCACCCCATTACTGTTCGATTCGTTTAAATCAATGCGCACTTATAGAAATAAGACATCCACGTCAAGCAGTTCTGTGCTATCTGCTGATGGcattaataaagaaatggaCATAACTTTAATGCCTAAGGTTACCATTTTGAACCACGTGCTTGACAGCCCATGGAGTCCGCGTATACCAATTAATTACAAACCATTTCGAAGAAAAGTGGAAGAGAACCATCTGTCTCAAATATCCAATCAAAAAGTATTCACCAGTAGTGAGTTATTATCGGTGCATATGCGGCGGCATTCCATGAAAGCGAGGTATACATGCGGTGATTGCAGCAAGACATTCTCACAATTGAGGAACTTTAAGTACCATATGTCAATACACCGTGGCACTAGGGAGTTTGCTGCTACCTGCACGGTGTGCGGAAAATACTTCAATGACAGAGGCTACCTAAGTAGTCACATGAAGATTCATAGAAATCGAAAGGAGTACAAGTGCACTCTCTGCCCGAAATCATTTAATCAACGAGTTGCATATAACATGCATGTGAGAATTCATACAGGAGTAAAGCCTCATGTGTGTGAGCAATGCGGAAAAGCCTTTTCCCGCAAGATGTTGTTGAAGCAGCACCAGCGCACGCATTCTGGCGAGCGGCCCTACGCCTGCCCGCACTGCGACAAACGATTCGCAGACCGCTCCAATATGACGTTACATCTTAGGTTACATACAGGTATAAAACCATTTTCCTGCACCATGTGTCCGAAGTCGTTCACAAAAAAGCATCATCTCAAGTCACATCTAAATTTCCACACGGGCTCCAAGCCCTACTCTTGTCCGCGGTGTAAACTTGCATTTACACAATCGTCAAACATGAGGACTCATCTGAAAAAGTGCCGAGCGCCTGAACCTATACCAGATAACGGAAATacgagtatataa
Protein Sequence: MCEWLSCGEWCDVKLLCGGRAFNAHRTVLASVSTFLRRILLACPSEETPTFIILPEFDLDALTSVLYYIYNGEVIIPKQKLEMFLDIIKAMQIFVDSQYFPQPTDSDYNNSDIGYGFESDLSQRNIFTLGSKDSQDQQYINFKKRNENLDPLLQYSVRKLNCTDTLVRSQNPSGERKPSLGNLKSPYGDRQRNSFLRDLFIETYPRNGNVNGLTAGVLAISNECYRAPTSVFLTNANGKDLNDTLLEPYKKTSEHISNSSSVFHIRKQQRCTRGEQDYGKTSKSFYDSFANVCSVEKINNKYVFDSESRNSRNNEWINHVPIPENGILQIGVQKQILSGLYVPSIDYSVTPLLFDSFKSMRTYRNKTSTSSSSVLSADGINKEMDITLMPKVTILNHVLDSPWSPRIPINYKPFRRKVEENHLSQISNQKVFTSSELLSVHMRRHSMKARYTCGDCSKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEQCGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGIKPFSCTMCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHLKKCRAPEPIPDNGNTSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00405167; iTF_00909030; iTF_00909089; iTF_01166957; iTF_01166888; iTF_00636667; iTF_00636761; iTF_00637853; iTF_00637977;
90% Identity: iTF_00405167;
80% Identity: iTF_00405167;