Cmes063827.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cybosia mesomella
Gene Symbol
L
Assembly
GCA_946251875.1
Location
CAMIUH010003316.1:50099-83346[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.6e-06 0.00033 22.9 1.7 1 23 85 107 85 107 0.99
2 16 0.7 1.4e+02 5.2 5.8 1 23 113 135 113 135 0.97
3 16 9.4e-06 0.0019 20.5 4.1 1 23 141 163 141 163 0.99
4 16 2.9e-05 0.0058 18.9 0.1 1 23 169 191 169 191 0.98
5 16 0.0013 0.26 13.7 0.0 2 23 207 229 206 229 0.94
6 16 6.9 1.4e+03 2.0 0.2 9 23 260 275 256 275 0.93
7 16 0.34 66 6.2 0.0 3 23 328 348 327 348 0.97
8 16 0.18 36 7.0 0.0 3 23 363 383 362 383 0.91
9 16 0.00025 0.05 16.0 0.6 1 23 391 414 391 414 0.95
10 16 0.038 7.6 9.1 0.0 1 23 419 442 419 442 0.92
11 16 0.12 24 7.6 0.1 1 23 503 527 503 528 0.94
12 16 0.00022 0.044 16.2 0.1 2 23 589 610 588 610 0.96
13 16 0.064 13 8.4 0.0 1 23 618 640 618 640 0.97
14 16 0.97 1.9e+02 4.7 0.3 1 23 744 766 744 766 0.94
15 16 0.0039 0.77 12.3 0.1 1 20 774 793 774 796 0.95
16 16 0.17 34 7.1 0.3 1 23 803 825 803 825 0.94

Sequence Information

Coding Sequence
ATGCTATTCAAAGGCAACAGTAGTAGGCTGGAACATCTCATAGAGAAGATTCAGGCGAACAAAGAAAACCACGACGTTACTTCGGAGGATATAAAAGAAGCACTGGGCAGCGTGGGCAGCACGGCGGGCAGTTCTTGGCCGTCATCGACACCGGAGCCGTCGCCATCGCCAGCTTCTACGCCGACATCCGCCGATGCGGCCGACGCTGAAGCCGAACCGCCCTTCACACTCGGCGCCACAGAGCACACACCGTATCAGTGCCAATTCTGTGACAAGGCTTTCCCTCGACTTTCTTATCTCAAGAAACATGAACAGACACACTCCGATCAGATGCCGTTTCGATGCGAGTTCTGCTCGCGACTGTTCAAGCACAAACGTTCCCGTGACCGACACGTCAAGCTACACACCGGTGATCGCAAATATCGGTGTGCTCATTGCGAGTCTGCCTTCTCCAGGAGCGACCACTTAAAGATTCATATGAAGACCCACGATAATCAAAAGCCCTTCCAATGTACCGTGTGCAACCGCGGGTACAATACTGCAGCCGCTCTGACATCACACATGCAGGGGCATAAACGTGATAGGGAAGTACGCGAACCGGACAGACGGCGCGCTCTGAGGTGTTTGAGATGCGGTGATGCCTTTCGAAGACCTGACTTGTTGCAGGCACACATGGTAAGTGCGCACGGAGCAGATCGTGCTACGATGACACCACCTCGTCGAGTCGCCTCTCAGCCACCGCCGACCCTCCTCGCGTGCATCTACTGTACACGGGACACTTTTACTAGCATGGAGCAACTACAACTACACGTACGAGCTACACATTCAGCATTATTGAACGGCGAGCCTCTAATACAATCTGTTGATCAACCCGCACCGACCGATCTCAGTCGACGAGCGGCGGATGATGGTCCACAAGTAAAACGTCCGCGATCCGGTTCTGGAACACCGCAGACAACATTATCACCCAGTACATTACTATGCAACCAATGTGACGCTGCCTTACCAGATTTCGAAGCATTCCGAGCCCATCTGAAAGGGCACCTTGAGGAAGGCGGTGACCTGGGACGTTCAAGCCCCGCTCCTTGTGTTCATTGTGGTGCTACATTCGCGGACGCAGCTGCTTCTGAACGACATCTCACAGCGCATTACCTGGCCGTTTCGTGTGAATACACCTGTCATAGTTGTGCCAGGAGTTTCTCTGCACCAGATGACTTGCAGAAGCATCTCCTGGAGCTACACGCACATCATCTGTATCGTTGCGCTTTGTGCAAAGAAGTATTCGACTCCAAAGTTGCTATTCAGGTGCACTTCGCAGTAGCTCACAGCGGTGAGAACAAGGTGTGGGTATGCCGTTCCTGCGGGGCAGGGGCTGGTGCTTTGCGCTCGGAGGCAGAGGGCGCCGCCCACGTGCGCACACGTCACGCGGCCGCCGTACCACGATGCGCGTGCGGCGCTCTGTTGGCGAGCGGCGCGGCGCCCTGCCCAACCCGCCCTCACCGTGCTTACCGTTGCCCTGTGCCCGCCTGCAACGATGCTTTTGCTGTCCAATATTTGCTGGAGCGACACGTGCAGGCGCACCACGCCATGCCTCACCAGGTAATTAATGGTGAAGTTACGAGACCTAAAAGGATAGACACTAGTAATGGGGGAGATGGTGGTGATGGAGAACAATCACCATGCACTCCTGGAGTGGAAAATGGTGGCTCTGTTGCCGTACCAGCTGGTGAAGAACGTCGTCGTAAGAACGGTGCTGTTGCTCTTCAATGCGCATATTGTGGTGAGCGCACACGAAGTCGGGCAGAGCTTGAAGCGCATACGCGAGCGCACTCTGGGTCTGCCGCAGCGCGACACAAGTGCTTAATTTGTGATGAAGTACTGCCTTCGGCTGCGGTGCTCGCGGAACATAAGCTTACACATTGCAAGGTGGTCTCAGGCGACACCTGTGCTCGATGCCGCGCAAGGTTATTGTCAGAAGAATCGTTTCTAAATCACATGGCGCGACATCATCCCGCACTTCCAGCCCCGTGCGTCGTGTGCCGACAAACATTAGCTTCAGAGGCTGAAGCGCGTCTCCATGCCCGTTTTCATCTGCGAGCAGGAGATGACGAACAGAGATGTGCAATATGCCTTCGTGCACTTCCCGAAGCAGAGGCTGGCGAAGGTGCTCGGGCGTGTTCAGCCTGCTACGCTCGTCACGCCGCTCCACGACCTCCGCCTCCGGTAGACCACGACTGTCGTTTATGTCGACGCGCTTTAGGTTCACCGACTCGATTACAAGCTCATCTTATTGAACACACATTTGCCGGTATTGGAGCGTTCACCTGCTACCTTTGCTCGGCTGTGTTTACAAGTGCGGCAGGATTGCAACGTCATCTTCCAGAGCATGCATCAGCTCCACGACCTTACGACTGCGCGCGCTGCGGGTTAAAGTTCTTCTTCCGAGCTGAACTGGACAATCATGCTTTTGTGCATCTTGAGGAGGCTGAGATAGCTCAACGCGCTTTCTATGAGGCGTACGCTCGAGGTGCAGCCACGGCTTGGGCTGCGTTAGCACCACCGGAACCACCACGTTCTTCTACGCCTCCATGCGAAGTGAAACTGGAACCGGAGATCAAGGAGGAAAAGAACGATGAGTATATTGAGGTGTCGTCTCCACCGCCAGCTCAACCGCCATCTGCTCCCACTGCACCAACTTCGCCTGAACCTATCGTTAAGCAAGAAAAACCTGACGAGGAGTGA
Protein Sequence
MLFKGNSSRLEHLIEKIQANKENHDVTSEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREVREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGADRATMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRATHSALLNGEPLIQSVDQPAPTDLSRRAADDGPQVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGDLGRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFSAPDDLQKHLLELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRTRHAAAVPRCACGALLASGAAPCPTRPHRAYRCPVPACNDAFAVQYLLERHVQAHHAMPHQVINGEVTRPKRIDTSNGGDGGDGEQSPCTPGVENGGSVAVPAGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGSAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCARCRARLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRAGDDEQRCAICLRALPEAEAGEGARACSACYARHAAPRPPPPVDHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALAPPEPPRSSTPPCEVKLEPEIKEEKNDEYIEVSSPPPAQPPSAPTAPTSPEPIVKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00822228;
80% Identity
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