Cmes040295.2
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010001423.1:75566-93949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7 1.3e+03 2.1 1.5 2 23 266 287 265 287 0.83 2 13 0.00026 0.051 16.0 0.9 1 22 292 313 292 316 0.92 3 13 0.00035 0.069 15.5 2.1 2 23 436 458 435 458 0.93 4 13 0.011 2.1 10.9 0.0 1 23 464 486 464 486 0.94 5 13 4.8 9.5e+02 2.5 0.1 1 10 497 506 497 507 0.88 6 13 0.024 4.8 9.7 0.1 1 23 506 529 506 529 0.89 7 13 2.5e-07 4.9e-05 25.5 3.5 1 23 534 556 534 556 0.98 8 13 1.5e-05 0.003 19.8 1.6 1 23 562 584 562 584 0.98 9 13 6.6e-05 0.013 17.8 4.1 1 23 590 612 590 612 0.97 10 13 8.7e-07 0.00017 23.7 0.6 1 23 618 640 618 640 0.98 11 13 0.0055 1.1 11.8 2.0 1 23 646 668 646 668 0.97 12 13 0.00024 0.047 16.1 0.1 1 22 674 695 674 695 0.94 13 13 5.7e-07 0.00011 24.3 1.0 1 23 733 756 733 756 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTCCTTTACAATTCTACTGTTTGTAGATTATGTGGAGAAGAAAATGATAATGGAACCTTGTTATATTCTTGTGaagaaaataattcaaatttaagTGAAGTTATTAATACATATTTACCAATCAAGGTTTTTGATGATGGACAACTGCCTCGGACAATTTGTCCAGGATGCACTATTCAATTGGAGGCCACCGTAGAATttttaacattaattataaatgGACAGAAAATAATTCGTGAACTTCATCTCAGAGaaacagaatataaaaaaacaattctcATTCCTGCCCCTGAACAAGATGTTATTACGGAACAAATTGTTTACGAAGTAAACACTAGTGATGGAGTATATCAAATAGAGCATCCTATGGCTTTACAAGTTGCTGGCCTTGACAAACCTAAACGTAAACGAGGCAGGCCTCCTAAAAAGCTTAAAACGCCTGAAGAATTAGCTCTAGAAGCAGCCACCAAGGAAAGAGAATTAAAATTCACAAATACTCGAGATAGGGATGAGGAGCCAGGCGGAAAAAGGAGACGGAAAACTCCTACCAGATTCAAAGATGTTGTGCagGGTAAGGAACTGGAAAGGATCTTCAAAGAGGAAGGTGTGACTGATGGGGAGGAAAGTGATCGGGATGCAAAACCCAAACTTAACATAGAAGTAAAAGTCCCTATGCCAAAGGAGCCAGAGATCATAGGACATATGGAGGACTCGGGAGAAGTGGTCGTCTTTGTCAAAGGCAAGGGGCGGGGTAGACCGAAAGgccCAATGCGAATGACTCGCAAAGAATGTGCAATCTGTGGTATGGAGTTCTCATGTTCTGGACGTTACATGTCTCATGTAGCACATCACGGACCTGTCATATACCAATGTAGCCAGTGTGAAGAGACCTTTGACACACAATTAAACTTCACCAACCATCAGAAAGAGTTAGGACATGAGGGAAAGAACGTCATACCATGCGGAAAGAAAATTGCTCAAAATATTCAAAATACATcaaaatttgatataattaAACTGGAACCTCCAGGCAGTGTTCAGTCTATAACTGAGACTCCAGATGTGGCAGATAACATGTTAGTAGACAATGTGATGACAGCTCTACCCGATCTGAGTGCTCCACCAGTTACCAATGAGACTGATGTTAATGTTCTGCTGTCTGACAATCTCGCCACTGAAATAACTTCTAGTCCTAACATTGATAGTGTTGTTAAAATATCCGATACTTCCACTGATGTAAAAGTTACTGAGAAGCCAGATGAGGCAGAACAAGAAACTCCAGTTAAAGTGAGAATCAGTTGCCCCCACTGTGATAAAACATTTAGCAATAAGCAGAGCAAGTCCCTGCATATTAAGGCGACTCACAAGGGCGAGCGGCCGTACGCATGCGCGGAGTGCGGAGCGCGCTTCGCCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGGCGCCGCCTCAACAACGTCAAGGGCTACGCCTGTGACCTCTGCGGGAAGGGCTACGCCTGTGACCTCTGCGGGAAGGTCTTAAATCATCCATCGTCAGTTGTGTACCATAAAGAAGCTGAGCACGCGGGACAACGATATGTTTGCAACAAATGCGGCAAGTCCTTCAAACATAAACAGTTACTACAGAGACATCAACTCGTTCATTCTCAAGTTAGGCCTTACACCTGCAAGACGTGTGATTCGTCATTCAAAACTAAGGCGAACCTGCTCAACCATCAGCTGCTACATACAGGTGTTAAAAAATTCTGCTGTGAAATATGCAAACAGAGGTTCGCACACAAGGCCAGTCTCACACTGCATATGAGGTGGCATACCGGCCACAAGCCGTACTCGTGCGGCACGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACTCGCGCATCCACACGGGCGAGAAGCCGTTCCAGTGCGCGCTGTGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGCGCGCTGGCACGCCGCCGAGCGGCCCTACGCCTGCGCGCACTGCCCCAAGAGGTTCAGCACGCGCAGCGCGTGGGCGGCGCACGCGCGGCGCGAGGCGGGCGGCGTGGGGCGGCTGCGCGCGCACCGCTGCCCGGCGTGGGCGCGCGCCTTCGCGGAGCGCTGGCCGCTACTGAAGCACATGCGGCCGGCGCCCGAGCGCCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACGCCTCCAACCTCAACAAGCACAAGAAGCAAGTCCATAAACAGATCAGTTTGCTGGCCAACTCGCAGCCCCAACCTCCTCAAATTCCACAAACAGTAGTGATCCCGAAGACTTCACCAGTTGAAGTCAAGTATACAGTGGACGACTCCCAGGAAGACTCGCTCGAAGAGAGAGTTATATATGTGACGTATGACGTCGAAGAGCCGGACTCGCCAGCATTCCATATACTATCTCCAGAACAAGTGGCAGGTTTAGACGAAACTAAAGTGTTGACAACATGCGAGTTATACTCAGGCCCATCACTACTAGTTCCACAGCCGGAACTGGAACAACTCGAGTTGGAGCCGGAACAGCTGGAGCAAGAAGAGTTGGAACAGCTTCAAGAGCAACTTGTATTAGAGGGACATGAGCATATGCCGGTGACTGATGAACAAGGCAACCCACTACATTTTACGATGCAAGATGGCACGCGCCTCGCCATCACGTCCGCTGACGGGAAATCGTTACAGGTGATAACACAAGATGGTCAGACCATTCCTGTCGAAATTAACGGATATGCTGAAGAAGAGGAGGTGGACAACCCCGACACCATCGTGCACCAGCTGAACCTGCACAAGAGCGTGGAGCACGACGCGGCCGCGCCCGTGGCGCACTACTTCACCATcgtttaa
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSCEENNSNLSEVINTYLPIKVFDDGQLPRTICPGCTIQLEATVEFLTLIINGQKIIRELHLRETEYKKTILIPAPEQDVITEQIVYEVNTSDGVYQIEHPMALQVAGLDKPKRKRGRPPKKLKTPEELALEAATKERELKFTNTRDRDEEPGGKRRRKTPTRFKDVVQGKELERIFKEEGVTDGEESDRDAKPKLNIEVKVPMPKEPEIIGHMEDSGEVVVFVKGKGRGRPKGPMRMTRKECAICGMEFSCSGRYMSHVAHHGPVIYQCSQCEETFDTQLNFTNHQKELGHEGKNVIPCGKKIAQNIQNTSKFDIIKLEPPGSVQSITETPDVADNMLVDNVMTALPDLSAPPVTNETDVNVLLSDNLATEITSSPNIDSVVKISDTSTDVKVTEKPDEAEQETPVKVRISCPHCDKTFSNKQSKSLHIKATHKGERPYACAECGARFAYPRSLALHAVSHRRRRLNNVKGYACDLCGKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQVRPYTCKTCDSSFKTKANLLNHQLLHTGVKKFCCEICKQRFAHKASLTLHMRWHTGHKPYSCGTCGKSFSQKGNLSEHSRIHTGEKPFQCALCPRRFTTSSQHRLHARWHAAERPYACAHCPKRFSTRSAWAAHARREAGGVGRLRAHRCPAWARAFAERWPLLKHMRPAPERPFRCPHCPRAFADASNLNKHKKQVHKQISLLANSQPQPPQIPQTVVIPKTSPVEVKYTVDDSQEDSLEERVIYVTYDVEEPDSPAFHILSPEQVAGLDETKVLTTCELYSGPSLLVPQPELEQLELEPEQLEQEELEQLQEQLVLEGHEHMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGYAEEEEVDNPDTIVHQLNLHKSVEHDAAAPVAHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637982;
- 90% Identity
- -
- 80% Identity
- -