Cmes030378.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000970.1:137122-139541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0023 0.47 12.9 3.3 1 23 17 40 17 40 0.96 2 19 0.0029 0.58 12.7 0.2 2 23 67 89 66 89 0.97 3 19 0.04 7.9 9.1 4.3 2 23 112 133 111 133 0.96 4 19 0.055 11 8.6 0.2 1 23 137 159 137 159 0.95 5 19 0.00013 0.025 16.9 2.7 1 23 164 186 164 186 0.99 6 19 0.016 3.2 10.3 1.2 2 23 194 216 193 216 0.90 7 19 2.5e-05 0.0049 19.2 0.6 2 23 224 246 224 246 0.97 8 19 0.00026 0.051 16.0 2.7 2 23 253 274 252 274 0.97 9 19 1e-05 0.002 20.4 0.2 1 23 280 302 280 302 0.98 10 19 0.0034 0.68 12.4 1.2 1 23 380 403 380 403 0.92 11 19 0.26 52 6.5 0.1 2 23 429 451 428 451 0.94 12 19 0.27 53 6.5 1.6 2 23 474 495 473 495 0.96 13 19 0.13 26 7.4 0.5 1 19 499 517 499 521 0.90 14 19 3.2e-05 0.0064 18.8 2.3 1 23 526 549 526 549 0.98 15 19 0.069 14 8.3 1.6 1 23 556 579 556 579 0.85 16 19 9.9e-06 0.002 20.4 3.2 1 23 586 609 586 609 0.98 17 19 7.4e-05 0.015 17.7 3.7 1 23 615 637 615 637 0.98 18 19 8.6e-06 0.0017 20.6 1.2 1 23 643 665 643 665 0.99 19 19 0.00041 0.082 15.3 6.2 1 23 671 694 671 694 0.98
Sequence Information
- Coding Sequence
- ATGCTTTGGTCTAATGCAACGCCTATCAGACGTTGCGGTGATATGGGCTACATGTGCTGTCACTGTAACGAGCAATACCGAGATCCCGCAGAATTAAAACAACACTCATTAACAACACATCAAGATGTTTTGAAAGCTTactttttcaataaattatgCATGGAtcgatattttattaaattagatATCACCTCACTACAATGCAAGATCTGCGACCGAAATATCGACACTATTGAACAGTTACTGCAACATCTAAAGACTGACCATGAGAAAACTGTTTACACTGATCTTAAGAATCACATTATCCCTTTCAAGTTCCACACCGAGACTCTCCAATGTTGTATATGCATAAAAACATTTAGTAGATTCAAGATGTTACTAGAACACATGCATATACATTACAGAAATTACATATGTGAGATATGCGATTCaggttattttaattatgttagcCTCACAAGTCATAAGCTTGCTCACGGCACAGGAACATACAAATGTGAATATTGCCCACAAATTTTTAACTCCAAAGATAAGAGAAGACTCCACCAAAGAAAACACAGAGATAAACCGTTACTCTCCAAGTGTGGATACTGCCATGAAAGTTTTACTGATTTTAGAAAAAAGGAAGCCCACATGGTAGCCTTACATGGGTTGAAAATACCTACACCTAAATGTCAATCGTGTGATAAAGTTTTCCCTGACAGAAATAAACTGCAGGCTCATATCAAGAGAGTACATCTAATGCAGAAACCACAGAAGTGTTCAGAATGCGAAATGAGATTTTGCACATCGGTAGAGCTAAAGAGCCACATGGTAAAGCACACTGGGACAAGAGCGTACTCATGCAATGTTTGTTCAAAAGCTTTTGGTAGGGAGAGGGCTTTAAAAGAGCATATGAATATACATAATGATACTAGGCGGTTCAAATGTGAACAAGTTCCCGTTACAGCCAAGAAAAATGATAGCACTTCAAAAACTAAGGTGATTAAActgaaaagtaaaaataataaagtagaaACTAACATACAAAAACCGAAACTGTTAAGATGGAAAAAATCTGAAAAGCATCTTAAAAACATCAGAGAGATATTAAAATGTACTAACGCTACTCCTATACGGAGATACAGTGGTATAGGATATACTTGCTGCTATTGTGAAGAACAGTTTCCTGAACCTGGTACTCTTAAAAAGCATACAATAGATACTCACGAAGATTTGTCTCAAGCAGACTTCATGAAAGTCAAGTTCACCGACTATGTGGTTAAATTAGATATTACGGATCTAATCTGTAAGCTTTGTAACGAATCTATTTATACCTTGGAACAAGTTATGGAACATCTGAGAGATCGACACAAGAAAACCATATTTATAGATATCCCTAATCATATTTTACCGTTTAAATTCGATGGTGAAACTTTAAAATGTTACATGTGCTTAAATGTTTTTAACAAATTCAAAGCACTTTTGGAGCATATGCATATACATTATAGAAATTACATTTGTGAAATTTGTGACGCTGGTTTTGTAAACAACCATGGAATCCACAACCATAAACCGTCACACAAAAATGGTGCCTACACATGCCAATATTGCCCTAAAGTCTTCAAaagtaatagaaataaaaacagtCATGAAAGGAGAGTCCATGTTCTTGCTCGCTACGTATACAAATGTCCATATTGTACAGaaaagttttataatataaaatttaaatacgatCATATGGAAGAAGTTCACGGCACTAAATCAACTACTTATAAATGCAACGCTTgcgataaaatatttaaaagttcaacTCAATTCAGAAGACATACAAGAAGAGATCATTTACTTGAACGTTCCCATAAGTGTACGGAATGTGATAGAGAATTTTTTACTAAAAAGAGCTTAACAAGTCATCTCATTTCGCATACAGGTTCTAGAGAGTTCCAGTGCGATGTGTGTTTAAAATCTTACGGAAGGAAAAAAACTCTGAGGGAACACATGAGAATACATAATAACGAAAAAAGATTTAAATGTAAGCATTGTGGGCAAGCATTTATACAGAAATGTAGTATGAAGGGGCATATGAAATCAAAACATGGAGACTAA
- Protein Sequence
- MLWSNATPIRRCGDMGYMCCHCNEQYRDPAELKQHSLTTHQDVLKAYFFNKLCMDRYFIKLDITSLQCKICDRNIDTIEQLLQHLKTDHEKTVYTDLKNHIIPFKFHTETLQCCICIKTFSRFKMLLEHMHIHYRNYICEICDSGYFNYVSLTSHKLAHGTGTYKCEYCPQIFNSKDKRRLHQRKHRDKPLLSKCGYCHESFTDFRKKEAHMVALHGLKIPTPKCQSCDKVFPDRNKLQAHIKRVHLMQKPQKCSECEMRFCTSVELKSHMVKHTGTRAYSCNVCSKAFGRERALKEHMNIHNDTRRFKCEQVPVTAKKNDSTSKTKVIKLKSKNNKVETNIQKPKLLRWKKSEKHLKNIREILKCTNATPIRRYSGIGYTCCYCEEQFPEPGTLKKHTIDTHEDLSQADFMKVKFTDYVVKLDITDLICKLCNESIYTLEQVMEHLRDRHKKTIFIDIPNHILPFKFDGETLKCYMCLNVFNKFKALLEHMHIHYRNYICEICDAGFVNNHGIHNHKPSHKNGAYTCQYCPKVFKSNRNKNSHERRVHVLARYVYKCPYCTEKFYNIKFKYDHMEEVHGTKSTTYKCNACDKIFKSSTQFRRHTRRDHLLERSHKCTECDREFFTKKSLTSHLISHTGSREFQCDVCLKSYGRKKTLREHMRIHNNEKRFKCKHCGQAFIQKCSMKGHMKSKHGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -