Cmes058717.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010002543.1:138112-141826[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00068 0.14 14.6 0.5 1 23 19 41 19 41 0.98 2 21 0.041 8.1 9.0 1.9 2 23 63 84 62 84 0.96 3 21 0.0049 0.96 12.0 0.0 1 23 107 129 107 129 0.94 4 21 5.2 1e+03 2.4 0.2 6 23 138 156 136 156 0.93 5 21 0.0057 1.1 11.7 0.7 1 23 226 249 226 249 0.98 6 21 2e-06 0.00039 22.6 0.8 1 23 255 277 255 277 0.98 7 21 0.00061 0.12 14.8 3.1 1 23 283 305 283 305 0.96 8 21 0.00013 0.025 17.0 1.4 1 23 311 333 311 333 0.98 9 21 5.8e-06 0.0012 21.1 4.1 1 23 339 361 339 361 0.99 10 21 0.02 4 10.0 5.9 1 23 367 390 367 390 0.95 11 21 0.00031 0.062 15.7 2.9 1 23 396 418 396 419 0.95 12 21 0.00022 0.043 16.2 2.1 1 23 425 448 425 448 0.96 13 21 0.2 39 6.9 7.6 1 23 454 476 454 476 0.97 14 21 0.00038 0.076 15.4 2.5 1 23 482 505 482 505 0.97 15 21 0.057 11 8.6 3.0 2 21 509 528 508 529 0.92 16 21 0.043 8.5 9.0 3.9 2 23 533 555 533 555 0.97 17 21 0.00017 0.035 16.5 0.5 1 23 562 585 562 585 0.96 18 21 0.042 8.3 9.0 2.8 1 23 590 612 590 612 0.95 19 21 0.0026 0.52 12.8 0.6 2 22 617 637 616 637 0.94 20 21 1.6e-07 3.1e-05 26.1 0.6 1 23 644 666 644 666 0.98 21 21 0.023 4.6 9.8 0.0 1 23 672 695 672 695 0.96
Sequence Information
- Coding Sequence
- ATGCAAACTATAAACaTCCAAGAAGTGAAGATAAAGATAGAACAATCCAAGTTCTATAAATGCCCAAAATGTCCACTTGCTTTTCTAAATAGGAATGATTTAACCACCCATGTGAAACAACATGAAAAAATGTTCTATGCTCATGTTACCAGTGCATATGTTAAAACAGAAAGGGTTAAAGTACTGGAATGCGACGACTGCAGGCAATGTTTCTTGAGTAAAAGACAGTTGTTGTTACATAGATTAGTTCATGTGAATAATTCTGTgcaaTATGCAAGAGATAGTAAAAAATACGGAAGCAATGGTAGAGTAAAGCCTTATAAGTGTCCAGAGTGTGATAGTGAGTTTGTGGCTGAAAGTTCCCTCGAAACCCATTCTGTCATCCACCAACCGTTTCCTCACATCTGCTTCTGTGGCATTGGGTACTACAAACTGCAAGACCTGATTAGCCATAAAAAATTAGTGCACCCGCTACCTGTCCAGAATGTTGAAGACAAAAAATCACTAACCAAAGACCTCATCAAAACTCCCCAACGAAACAAACGGAAACGGCTCTCATTAAAGAAGCAAAGACATATAAAATCTGAGCCAAAATTGAAATCAGAACCCACAATACAGTGGGTCCTTTCACTTCCACCGTTAGATATAGAGTTTCAGAAAACATCGGATAAGAGATACCAGTGCCCTGAGTGCTTGAAAACCTACCTAACACAAAAAAATGCACAGTTACATTACCGTAGTGTACACAGAAATGAGAGACCATATGTTTGTCACCTATGTAACAAGGCTTTCACTCAGCCTATTACCCTTAAAAACCATCTGCTTGTCCATGCCGGGATTAAAGACCATGCATGCCAATATTGTAGTAAATCTTTTACAACTTATGATCTTCGGATGCGCCACGAACGTGTACATACTGGAGAGAAACCATTCAAGTGTTCTCAATGTGAGAAAGCCTTCAGTGACCCCAGTGCTCACCAACGTCACGAACGGATTCATAGTGGGTTTATGAAGTACAAATGTGAGCATTGTCCTAAAGCTTTTACTGATCATAGTGCACTGTATGTACATAGGAAAAGGCATCTGGATAAAAGGGACTTTAAGTGCAAGAAATGCAATAAAGGCTTTTATACCAAGGCTGACTGTAAGAAGCACTTTGATACTGTACACAATCATGAGTATAAATTCTGCTGTGACTACTGTGGTGTCTATTTTAGcaataaaacaaatatgttAGTTCATATTGAAATACACCACCTTCCCACCAAAGCGTATACATGCCAACTAtgctttaaaaaatttaatttaaaaagctATTTACGAACACATATCACGGTAGTTCATGATCGGAGAAAAGATCACACATGTAGTATTTGTTATAAGCAATTCACAGCTAAATGTGTTTTAAAACAGCATATGTTACATCATTCTGGAGTAAAAAAGTTTAAATGCGATACCTGTTCTATGAAGTATTACACAAAATCACTACTCAGAGATCATATTCTTAAAAAACATCTACGTATAATGTGTAAAATATGCAAACGTTTTTTCACttgcacaagcaatttagaaaAACACAAGCTGAAGGAAAGCGAGCAATGTGATACATGTGGCAAGGAGTTTTTCTGCAAATATAAGCTACAGTCCCATTATAACAAAGTACATGTTAAAACTGAATGTCAGTATCAGTGCGACTATTGTGGACGAGCATTTGTCAAATATATTCAGATAAAAAACCATATTCTGAATTATCATAGCAAACCAAAATTTTTGTGTGATCACTGCGGGATGCACTTTGGCCTTAAAGAGGCAATAAGAAGTCATATGTATAAACATTTGAATCTATTGCGTTGTAATATTTGCTATAAACGATTCTATTCAATTGTAGAATTACAAAATCACAAGAAAACTAATTGTACTATCGTAAAGTATACATGTGAAATATGTGACAAGTCCTTTAGGTACTCAAGCAGCTTAGTGAAGCATCTAGAGATACATATGAATCGTACAATGTACAACTGCCCCGTATGTCCCAAAGAGTTATTATCCAAAGCTAGTGTAATCAGACATATACGCCTAGTACACTCgcgattaaaaaagaaataccaATGA
- Protein Sequence
- MQTINIQEVKIKIEQSKFYKCPKCPLAFLNRNDLTTHVKQHEKMFYAHVTSAYVKTERVKVLECDDCRQCFLSKRQLLLHRLVHVNNSVQYARDSKKYGSNGRVKPYKCPECDSEFVAESSLETHSVIHQPFPHICFCGIGYYKLQDLISHKKLVHPLPVQNVEDKKSLTKDLIKTPQRNKRKRLSLKKQRHIKSEPKLKSEPTIQWVLSLPPLDIEFQKTSDKRYQCPECLKTYLTQKNAQLHYRSVHRNERPYVCHLCNKAFTQPITLKNHLLVHAGIKDHACQYCSKSFTTYDLRMRHERVHTGEKPFKCSQCEKAFSDPSAHQRHERIHSGFMKYKCEHCPKAFTDHSALYVHRKRHLDKRDFKCKKCNKGFYTKADCKKHFDTVHNHEYKFCCDYCGVYFSNKTNMLVHIEIHHLPTKAYTCQLCFKKFNLKSYLRTHITVVHDRRKDHTCSICYKQFTAKCVLKQHMLHHSGVKKFKCDTCSMKYYTKSLLRDHILKKHLRIMCKICKRFFTCTSNLEKHKLKESEQCDTCGKEFFCKYKLQSHYNKVHVKTECQYQCDYCGRAFVKYIQIKNHILNYHSKPKFLCDHCGMHFGLKEAIRSHMYKHLNLLRCNICYKRFYSIVELQNHKKTNCTIVKYTCEICDKSFRYSSSLVKHLEIHMNRTMYNCPVCPKELLSKASVIRHIRLVHSRLKKKYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -