Basic Information

Insect: Cybosia mesomella
Gene Symbol: -
Assembly: GCA_946251875.1
Location: CAMIUH010002246.1:80485-87201[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.8e-07 7.5e-05 24.9 0.5 1 23 191 213 191 213 0.98

2 14 0.013 2.5 10.7 2.9 1 23 219 242 219 242 0.96

3 14 3.4e-07 6.8e-05 25.0 0.6 1 23 248 270 248 270 0.98

4 14 2.3e-06 0.00046 22.4 3.1 1 23 275 297 275 297 0.99

5 14 4.9e-06 0.00098 21.4 3.7 1 23 303 325 303 325 0.99

6 14 7.9e-07 0.00016 23.9 1.1 1 23 331 354 331 354 0.95

7 14 3.6e-05 0.0072 18.6 3.1 1 23 360 382 360 382 0.97

8 14 1.7e-05 0.0034 19.7 0.8 1 23 388 410 388 410 0.98

9 14 4.8e-05 0.0096 18.3 2.1 1 23 416 438 416 438 0.99

10 14 8.3e-08 1.6e-05 27.0 0.7 1 23 444 466 444 466 0.98

11 14 2e-06 0.0004 22.6 3.5 1 23 472 494 472 494 0.98

12 14 0.072 14 8.3 2.9 1 23 500 519 500 519 0.95

13 14 6e-07 0.00012 24.3 0.8 1 23 525 547 525 547 0.98

14 14 0.0012 0.23 13.9 6.1 1 23 553 575 553 575 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.8e-07	7.5e-05	24.9	0.5	1	23	191	213	191	213	0.98
2	14	0.013	2.5	10.7	2.9	1	23	219	242	219	242	0.96
3	14	3.4e-07	6.8e-05	25.0	0.6	1	23	248	270	248	270	0.98
4	14	2.3e-06	0.00046	22.4	3.1	1	23	275	297	275	297	0.99
5	14	4.9e-06	0.00098	21.4	3.7	1	23	303	325	303	325	0.99
6	14	7.9e-07	0.00016	23.9	1.1	1	23	331	354	331	354	0.95
7	14	3.6e-05	0.0072	18.6	3.1	1	23	360	382	360	382	0.97
8	14	1.7e-05	0.0034	19.7	0.8	1	23	388	410	388	410	0.98
9	14	4.8e-05	0.0096	18.3	2.1	1	23	416	438	416	438	0.99
10	14	8.3e-08	1.6e-05	27.0	0.7	1	23	444	466	444	466	0.98
11	14	2e-06	0.0004	22.6	3.5	1	23	472	494	472	494	0.98
12	14	0.072	14	8.3	2.9	1	23	500	519	500	519	0.95
13	14	6e-07	0.00012	24.3	0.8	1	23	525	547	525	547	0.98
14	14	0.0012	0.23	13.9	6.1	1	23	553	575	553	575	0.98

Sequence Information

Coding Sequence: atgTCATTTATGTGGAATATAAACGATTTATGTCGCTGCTGCCACGCTCAAGGCAGTTTTAAGAGCTCAAATGTGCCTGAAAGTTTTGAACAAGATTATTGTGCTCTGTTAAAAGATACATTTGATGTTATCgTTACTCCTATCACGCTAGACGCCACGGTTTCCTACAATATATGCGAGACATGTGAACCACGGCTCAGGGATGCTGCCTTGTTCAAGAAGCAGGTGGTGTCCTGTGAGGACAGGCTGAAACAATATTTGTATAAGGATTATAAATTAATGGATGCAGTCCCTTTGCAGCAAAACATTAAACATGAACTAGAACAAGAAGatCTAAAAACTGAAACGTCATCTTTGGAAGATAGATTGGAATTGAAATGTAGTGAAGTCAAACTTCAACAATTAGATAAGTTTCTGCAACAAGAAGACGATGATCAGCCGTTGTCGACACTTCGTAGCTTTAAAGAGGATACAGAGCCAGAACTGCACCACGAAGGTGGGGTGGAAGATGTGAATTGGGAAGCTTCACCAGACGGAACCGCAAAACGAAAAGCAACCAAAGCAAAAAAATACTCCTGTGAGATTTGTCAAAAGAAATTCTCCTACAATGGTTCTTTGGAGGTTCATATGAAGGTCCATAACGGAGAGAAATCATTCAGCTGTCACCTTTGCGACACAGCACACAGAGATAACAAAGAACTTACCAAACATATTACCATCATGCATATTGTTGACAACCAGTACCCTTGTAACGTATGCGATAAGGTTTTCGAAAAAGCTCGTATGCTAAAGAAACACATAAAAACACATTATAGCGAGAAATTCAAGTGCACAGAATGCCAAAAGGAATTCCAACGAAAGAAAGGCTTGAAGGAACACATGAAAACGCATACAGGCGAACGGAAATACACTTGTGAAATCTGCAATAAATCTTTTGGACATAATCAGACGCTGAAATCTCACATGTTTACGCATACAGGGGAAAGACCTTACGTCTGTGATGTATGTGGGAGGAGGTTCCCGCAAAGAACGCATCTTAAACGGCATATCTTTATAATCCATGCGGGTATCAAACCGCATACCTGCAGCGTTTGTAAGAAGCAGTTTTCGAGTAAAAGTTATTTGGCAATTCACGAGAGGCAACATACAGGAGAAAGGCCGTATTCTTGTGAAGTCTGTAAAAAAGATTTCACAGCGTATACTACTCTGAAAGTCCATATGCGTGTACATACAGGTTTTAAGCCATATACGTGTAGCTTTTGTGATAGACAATTCGCACAAATGGCTAGTTTTAAACTTCATCAAAGAACACATACCGGTGAAAGACCGTTTTCTtgcaaaatttgtaaaaaaccGTTTTCTGATAATGgatatttaaaaattcatatgcGGGTACATTCTGGGGAAAAACCGTTTTCTTGCGAGATTTGTAAAAGATGTTTTAGGGAAACTGGGCAGCTGAAAAGGCATATGCGAGTTCATACCGGTGTTAAACCTTATACATGCAAAATTTGTAATAAACAAATAGGTAATTTATCTAAGCATATGAGGGTACATTCAGAACAAAGGCCTTTTAGctgtaatatatgtaataaacaGTTTTCTATAAATGGCAATCTGAAGTTGCATATGAGGGTGCATACCGGGGAAAGACCGTTTAGTTGTGATTTATGTAGTTGTCAATTTACCCAAAGTAGTGGCTTAAAAAGACATCGGTGTATCCATGTTGGCAAAAGTGATGGTTGA
Protein Sequence: MSFMWNINDLCRCCHAQGSFKSSNVPESFEQDYCALLKDTFDVIVTPITLDATVSYNICETCEPRLRDAALFKKQVVSCEDRLKQYLYKDYKLMDAVPLQQNIKHELEQEDLKTETSSLEDRLELKCSEVKLQQLDKFLQQEDDDQPLSTLRSFKEDTEPELHHEGGVEDVNWEASPDGTAKRKATKAKKYSCEICQKKFSYNGSLEVHMKVHNGEKSFSCHLCDTAHRDNKELTKHITIMHIVDNQYPCNVCDKVFEKARMLKKHIKTHYSEKFKCTECQKEFQRKKGLKEHMKTHTGERKYTCEICNKSFGHNQTLKSHMFTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHAGIKPHTCSVCKKQFSSKSYLAIHERQHTGERPYSCEVCKKDFTAYTTLKVHMRVHTGFKPYTCSFCDRQFAQMASFKLHQRTHTGERPFSCKICKKPFSDNGYLKIHMRVHSGEKPFSCEICKRCFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSEQRPFSCNICNKQFSINGNLKLHMRVHTGERPFSCDLCSCQFTQSSGLKRHRCIHVGKSDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707185;
90% Identity: -
80% Identity: -