Cmes040887.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cybosia mesomella
Gene Symbol
-
Assembly
GCA_946251875.1
Location
CAMIUH010001454.1:44468-57537[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 4.1e-06 0.00081 21.6 4.0 2 23 304 325 303 325 0.97
2 22 7.8e-06 0.0015 20.7 0.5 1 23 331 353 331 353 0.99
3 22 0.00044 0.087 15.2 4.6 1 23 357 379 357 379 0.98
4 22 6.6e-06 0.0013 21.0 1.7 1 23 385 408 385 408 0.96
5 22 0.00015 0.03 16.7 1.1 1 21 414 434 414 436 0.96
6 22 2.2 4.3e+02 3.6 2.1 1 15 442 456 442 456 0.93
7 22 0.00016 0.032 16.6 1.8 1 22 472 493 472 493 0.97
8 22 0.0013 0.26 13.8 2.0 1 23 512 534 512 534 0.99
9 22 7.2e-07 0.00014 24.0 4.4 1 23 540 562 540 562 0.99
10 22 0.00012 0.023 17.0 0.7 2 23 569 590 568 590 0.97
11 22 0.0022 0.44 13.0 3.6 1 23 596 619 596 619 0.97
12 22 2.8e-06 0.00056 22.1 0.3 1 23 625 647 625 647 0.99
13 22 0.00055 0.11 14.9 5.2 1 23 651 673 651 673 0.98
14 22 1.8e-06 0.00036 22.7 3.5 1 23 679 702 679 702 0.96
15 22 2.2e-07 4.4e-05 25.6 0.2 1 23 708 730 708 730 0.99
16 22 0.5 99 5.6 4.9 1 23 757 779 757 779 0.87
17 22 5.9e-06 0.0012 21.1 1.5 1 23 784 806 784 806 0.99
18 22 1.7e-06 0.00035 22.8 4.1 1 23 812 834 812 834 0.99
19 22 2.6e-06 0.00051 22.2 3.4 1 23 840 862 840 862 0.98
20 22 0.0022 0.44 13.0 2.5 1 21 868 888 868 889 0.95
21 22 0.16 32 7.2 3.9 1 19 896 914 896 918 0.91
22 22 0.00045 0.09 15.2 1.8 1 23 924 946 924 947 0.96

Sequence Information

Coding Sequence
ATGGCCGGCCCACTTGATCAGACGAATATTTGTTACGCTAGAATCGCACTTGCATTGCAGTTTCCGGCACAAGACAGCAGACCTATACACGCCTGCTACATCTGCCATGCGAGGCTGCAGAACTGCTACCAGCTCAAGAAACAGTGTCTCCGTAGCAAAGAGCTTTTCACGCAGATGCTGAGTAACAAGGCATTCAATCTCCAAGATAAGATCTCAAGCACTTTGAGGTCAATCGCAGTTATTCAACTTAGTACGGGAGGCCTTATTCACAAGAGGACAGACGCTGGTATAAAACTGGAGGCACCAGATGTGTTTGGTGATGCTGggaatttttatatattagAAGAGAAACTGATAGAAAAGAAAGGTATAGAAGGAGAGAATGGGTCGACAGCAGAAGGAGAGGAGAATTGTTCGAAAGCAGAAGATGACGAAGCTCCCGAAGATGCGGCGAAGAGCGAGTCGTGTGACGTTCACGCAGAAGAGAAACTGATAGAAAAGAAAGGTATAGAAGGAGAGAATGGGTCGACAGCAGAAGGAGAGGAGAATTGTTCGAAAGCAGAAGATGACGACGCTCCCGAAGATGCGGCGAAGAGCGAGTCGTGTGACGTTCACGCAGATGAAGATGCTGTCCCGGAGCCGTTTGTGGACTCTGAAGAAGATGATATGCCTCTCGTCATTGTGAAGGATGAACCGCGAGACGCACAGACACGGACCAATGAGCCGGAGATGACAACGCCAGCAGCGCAGAAGGACAACATCGAACACCTAGGATTATTAATGAAACATGCCACAGTCAAGTTAGAGCGACTTGAATGGGATGTCTTCAAAGCTGCGCTTTCACGCAGCATCATCACTGGATTGGACATCAAAGAGCAAGCTGTGAAAGAAACTGGGGAAAACCCGATGAGCTGTAATCAATGCGGCAAAAGTTTTCACAGGAAATATAATTTGAAGAAACATGCACTTACCCACAGTACTGAAAGAAATTATCAATGTGATGTATGTAAGAAAACCTTCAGGTTGAAGGAAGGGTTGCAAGGTCACATGAACATACACACTGCTTCACATCAATGTAaagtatgtaagaaatgtttgaGTACACAAGTTCAGTTGGATTTACATATGCGCTTACACACCAATATAAAACCATTCCAATGTGAAGTCTGCAAAGAGTGTTTCAGAAGACCAGACGCTTTGAAACGTCATAATATGCGCGCGCACACTGGCGAGAGACCCTATCAATGTTCTTTGTGTGATAAAGGGTTTGTTAGCCGCGGTCCTTTGAATATTCATATGCGCTGTCACACTGGAGACAAACTTTTTAAATGTAATGTGTGTAATGGATATTTCAGCAATAAGCATAATCACTCTGATCAATCCAATAATGACGTGGGTAATGTTGCAATCCAGTATCAGTGCAATGACTGTGGGCAAAGTTACAATAACAGCAGGAGCTACTTCAGTCACAAACGCACGCCATGTTTTGGTAAAAGACCTCGTTCGCGACTACCCCCTGTCTTCAAAAATCCATTTCAGTGTAATTTTTGTGAAGAACTATTCTTTCGTAAAGATTCGTACGAAAATCATGTTCGTTCACATACTGGGGAAAAACCTTATTCatgtaatatttgtaaaaaaaaatttagtcaTAATTCCATGTTGAATACTCACATGCTCACACATAATGAGGAAAAACGAATTAGTTGTAATCAATGCGGTAAAAGTTTGATGAACCAACGAAATTTGGATAAACATTTGCTTACCCACATTACTGAAAATAATTATCAATGTGATGTATGTAACAAAGCCTTCAGGTCAAAGTTGCACTTAGGGTGCCACATCAGGCGCGTGCACAACAAGGTGAGACAATATCAGTGTGATATATGTAAAAAACGTTTCACTGGGAAAGGTGCTTTGCAAGGTCACATGAACATACACACTGCTTCACATCAATGTGAAGTATGCAAGAAATGTTTGAGTACACAATTTCAGTTGGATTCCCATATGCGCTTACACACTAATATACAACCATTTCAATGTGAAATCTGCAAAAAGTGTTTCAGAAGACAAGACGCTTTGAAACGTCATAATATGCGCGCGCACACTGGCGAGAGACCATATAAATGTTCTATATGTGATAAAGGGTTTGTTAGCCGCGGTCCTTTGAATGCTCATATGCGCACGCACACTGGAGACAAACCTTTTAAATGTGATGTGTGTAACGGATATTTCAGCTATAAGCACACGCACTCTGATTCAAAGTTATATCAATGTAAATTGTGTAATAGATACTACAAACGCAATAGTTTACATTCGCACATGACCTTGAAGCACGGGAATCAAATATATCAATGCGATCTATGCAATAAAGGTTTTAGTAGTAAGTATGCATTTACACTTCACGTGCGTAGACATACAGGTGAAAAACCATATCAGTGCGATTTGTGTAAGAAGTGTTTTGTAACGAAATCACGTCTAAGGGAGCACATGCGTATACACATAGGAGATAAATCTTATGAATGTAATATTTGCAAGAAGTTTTTCATAAGGCGTGCTCATTTCAAAAGACATATAATGATACACACTGGTGAAAAACCACATCAATGTGATGTATGTGAGAAAAAATTCCGTCTTAAACGTAGTTTGGACCGCCATATTTGTGTACGTAATATAGATCAGCTATACCAATGTAAAGAATGCAATAGACTCTTCAATAAACAGAATGCTTATAAAATGCATTGTTTGCTACATAAAAGTGATAAACCGTTTCAATGTGATCTATGTAAGAAACGGTTTGCTTTTAAGGTGTCCATCGTTGCTCATATTCGTAATCATCACGATATTTATTAG
Protein Sequence
MAGPLDQTNICYARIALALQFPAQDSRPIHACYICHARLQNCYQLKKQCLRSKELFTQMLSNKAFNLQDKISSTLRSIAVIQLSTGGLIHKRTDAGIKLEAPDVFGDAGNFYILEEKLIEKKGIEGENGSTAEGEENCSKAEDDEAPEDAAKSESCDVHAEEKLIEKKGIEGENGSTAEGEENCSKAEDDDAPEDAAKSESCDVHADEDAVPEPFVDSEEDDMPLVIVKDEPRDAQTRTNEPEMTTPAAQKDNIEHLGLLMKHATVKLERLEWDVFKAALSRSIITGLDIKEQAVKETGENPMSCNQCGKSFHRKYNLKKHALTHSTERNYQCDVCKKTFRLKEGLQGHMNIHTASHQCKVCKKCLSTQVQLDLHMRLHTNIKPFQCEVCKECFRRPDALKRHNMRAHTGERPYQCSLCDKGFVSRGPLNIHMRCHTGDKLFKCNVCNGYFSNKHNHSDQSNNDVGNVAIQYQCNDCGQSYNNSRSYFSHKRTPCFGKRPRSRLPPVFKNPFQCNFCEELFFRKDSYENHVRSHTGEKPYSCNICKKKFSHNSMLNTHMLTHNEEKRISCNQCGKSLMNQRNLDKHLLTHITENNYQCDVCNKAFRSKLHLGCHIRRVHNKVRQYQCDICKKRFTGKGALQGHMNIHTASHQCEVCKKCLSTQFQLDSHMRLHTNIQPFQCEICKKCFRRQDALKRHNMRAHTGERPYKCSICDKGFVSRGPLNAHMRTHTGDKPFKCDVCNGYFSYKHTHSDSKLYQCKLCNRYYKRNSLHSHMTLKHGNQIYQCDLCNKGFSSKYAFTLHVRRHTGEKPYQCDLCKKCFVTKSRLREHMRIHIGDKSYECNICKKFFIRRAHFKRHIMIHTGEKPHQCDVCEKKFRLKRSLDRHICVRNIDQLYQCKECNRLFNKQNAYKMHCLLHKSDKPFQCDLCKKRFAFKVSIVAHIRNHHDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-