Cmes065761.2
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010003771.1:329382-331214[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-08 2.3e-05 26.0 0.0 2 40 19 60 18 63 0.83
Sequence Information
- Coding Sequence
- ATGCCACGTAAATATGTCAAGAAAGTACCTAcaagaaattataaaaattattcagAAGAGACACTTCGAGATTGTCTAGCAGCAATAGAAAACAAAGAATTTAGTCAAAGAAAGGCCAGTGAAATATATGGGATTCCAAGAAGGACTATAATAAATCAACTGAGACATTTAAGACGCAATGAAACACCAAGGCCACCAGGAGCACCTACTACATTTAcagttgaagaagaaaaaatattcgtatcatgcatacaaaaattaAGCGAGCATGGTTTTCCTCTTACAAGTTTCGATTTGCGCATGGTCATAAAATCTTATCTGGACAGAATTGGGAGGAGAGTTTCCAAGTTCAAAAATAATTGCCAATGGGTGTCGAGTTTTTTGAAAAGGAATGCCGAATTGTCGCAGCGGCTTGCTGCTAATATAAAGCGCAGTAGAGCTGGCATTGATCGGGACACCCTCACAGATTATATCCAAAATTTGGCAGAGGTGGTAATAGATGTTCCGCCAGAGAACATATGGATATATGACGAAACGAATTTGTGTGATGACCCTGGGCAAAAAAAGATTCTGACGAGGAGAGGCACCAAATACCCCGAAGTTATAAGAGATACATCCAAAAGTTCTACATCGATCATGTTTGCTGGAAGTGCTGATGGAGAATTACTTCCTCCATACGTTGTGTACAGATCTAAGCAGCTATGGAATACTTGGACAGAAAATGGGCCAAAAAATACTCGCTACAATTGTAGCCCTTCCGGTTGGTTCGACATGAATATTTTCAATGACTGGTTTTTCTCACTTGTCTTGCCAAAGCTCAAAAAACAGGAAGGCCCTAAAGTCCTCATAGGCGACAATCTATCGTCACATATTTCGGTGGATGTTCTTAAGGCCTGTAAAGAAAATAACATAAGGTTCGTGTGCCTTCCTCCGAACAGCACCCACTTGACGCAGCCACTTGATGTCGCTTTCTTTCATCCAATGAAAGTTGCATGGCGGAAAATTCTAACGACATGGAAAAATTGCGAACAAGGCATACGGGAAAAAACTGTTCAAAAGAGCAGTTTCCCAATCGTACTAAAAAGACTTGTTGACGATTTAGaagaaaatagaaaagaaaacttGAAATCCGGTTTCAGGAAATATGGGATATATCCGATCGATGCAAATGCCTTGTTGGAGAGATTGCCTAAACCTGTTGATAAGACAGCAGCAGAAGATTCTTTTCTGGAAACACTGCAAGCGAAGAGAGTGGAATGGACTGGAGGCGTTAACCCGAAAAGACGACGTACAAAACTCAACATAGTTCCGGGAAGAAGTGTCACTGAACTGATAGATACTCCACAGGGCGACAAGGAAAACGAGGAACCATGTTTTGAAGTTGAAGCCCAGGCCTCAACTTCAGAACCTCGTCATACGAGAATACACAGTGACAGTACATATGCCGAGAGTGAAATATCTCTTCATGACTCTTCAAACGACGGTACAATGAACGATATGCTGGAGACGATGTTAGAAGAAGAGACAAACTTGGATAATGTCACCGAAAGTTCTAAAACGAAAAATCTAAAACCACTCATTAAGACCGAAGGAGAATATGTAGCTTTCACGTACGAAGGGGAGATTTTTCCAGGTGATGAGATCCAATATAATTGGAAAGAAGTTCTGGGATGTATATCTGCACCAAAAAAAATTGGTCGTCGTGAGTTTTATACTGTTCCTGAACTCGATCAAATTTGGGGGATCTAA
- Protein Sequence
- MPRKYVKKVPTRNYKNYSEETLRDCLAAIENKEFSQRKASEIYGIPRRTIINQLRHLRRNETPRPPGAPTTFTVEEEKIFVSCIQKLSEHGFPLTSFDLRMVIKSYLDRIGRRVSKFKNNCQWVSSFLKRNAELSQRLAANIKRSRAGIDRDTLTDYIQNLAEVVIDVPPENIWIYDETNLCDDPGQKKILTRRGTKYPEVIRDTSKSSTSIMFAGSADGELLPPYVVYRSKQLWNTWTENGPKNTRYNCSPSGWFDMNIFNDWFFSLVLPKLKKQEGPKVLIGDNLSSHISVDVLKACKENNIRFVCLPPNSTHLTQPLDVAFFHPMKVAWRKILTTWKNCEQGIREKTVQKSSFPIVLKRLVDDLEENRKENLKSGFRKYGIYPIDANALLERLPKPVDKTAAEDSFLETLQAKRVEWTGGVNPKRRRTKLNIVPGRSVTELIDTPQGDKENEEPCFEVEAQASTSEPRHTRIHSDSTYAESEISLHDSSNDGTMNDMLETMLEEETNLDNVTESSKTKNLKPLIKTEGEYVAFTYEGEIFPGDEIQYNWKEVLGCISAPKKIGRREFYTVPELDQIWGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826911;
- 90% Identity
- iTF_00404811;
- 80% Identity
- -